Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,069,768 – 9,069,860 |
Length | 92 |
Max. P | 0.500000 |
Location | 9,069,768 – 9,069,860 |
---|---|
Length | 92 |
Sequences | 4 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 82.97 |
Mean single sequence MFE | -23.00 |
Consensus MFE | -16.08 |
Energy contribution | -14.95 |
Covariance contribution | -1.13 |
Combinations/Pair | 1.30 |
Mean z-score | -1.47 |
Structure conservation index | 0.70 |
SVM decision value | -0.08 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9069768 92 - 22407834 ACAGACAACGCAGAGAGUACAGUGGGGCCUAUGUGUUACUGGACACAACUGUAUUCCAAAUGCAGAAUAAGUCUUUGAGUAUGAAUAUUGUC ...((((((.((((((((.((((((.((....)).)))))).))....((((((.....))))))......)))))).))........)))) ( -22.00) >DroSec_CAF1 63408 90 - 1 ACAGACAACGCAG--UGUACAGUGGGGCUUAUGUGUUACUGGGCACAGCCCUAUUCCAAAUGGAGAAUAAAUCUUUGUCUAUGAAUAUUGUC ...(((((.((.(--((..((((((.((....)).))))))..))).))..(((((...(..((((.....))))..)....)))))))))) ( -25.80) >DroSim_CAF1 69048 90 - 1 ACAGACAACGCAG--UGUACAGUGGGGCUUAUGUGUUACUGGACACAGAUCUAUUCCAAAUGGAGAAUAAAUCUUUGUGUAUGAAUAUUGUC ...((((((((((--(((.((((((.((....)).)))))).))))((((.(((((........))))).)))).)))))........)))) ( -24.70) >DroEre_CAF1 65714 82 - 1 ACAGGCAGCGCAG--AGUACAGUGAGGCUUAUGCGUUGCUGGACACA--UCUAUUCCGACUGCAGAAUAUUUCAUU------GAAAAUUGUC ...((((((((((--(((........)))).))))))))).((((..--..(((((........)))))((((...------))))..)))) ( -19.50) >consensus ACAGACAACGCAG__AGUACAGUGGGGCUUAUGUGUUACUGGACACAGCUCUAUUCCAAAUGCAGAAUAAAUCUUUGUGUAUGAAUAUUGUC ...(((((........((.((((((.((....)).)))))).)).......(((((........)))))..................))))) (-16.08 = -14.95 + -1.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:59 2006