Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,066,324 – 9,066,415 |
Length | 91 |
Max. P | 0.500000 |
Location | 9,066,324 – 9,066,415 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 79.51 |
Mean single sequence MFE | -32.05 |
Consensus MFE | -23.97 |
Energy contribution | -24.61 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.19 |
Mean z-score | -0.96 |
Structure conservation index | 0.75 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9066324 91 - 22407834 --------------------------GCAACGGCAAGUUGAUGUUGCCCCCGUCCUGGCAUCUAAUUGGGGCCCUCCUAGUGCUCGCGGCAACAGCGGGGGACUCCACCAA---CAAGAU --------------------------((....))..((((.((..((((((((....((.....((((((.....)))))).......))....))))))).)..)).)))---)..... ( -29.90) >DroPse_CAF1 76625 99 - 1 ---------------------CCAGAAGAACGGCAAGUUGAUGUUGCUGCCAUCUUGGCAUCUAAUUGGGGCCCUCCUCGUGCUCACGGCCACAGCGGGGGACGCCACCAACAACAAGAU ---------------------..........((((.((.......))))))((((((........(((((((..(((((((((.....))....)))))))..))).))))...)))))) ( -29.40) >DroGri_CAF1 97362 91 - 1 --------------------------GCAACGGCAAGUUGAUGUUGCUGCCGUCUUGGCAUCUGAUUGGGGCCCUCCUAGUGCUCAUGGCAACAGCGGGGGACUCCACCAA---UAAGAU --------------------------((.((((((.((.......))))))))....))((((.((((((((((((((..(((.....)))..)).)))))...)).))))---).)))) ( -34.00) >DroWil_CAF1 109551 117 - 1 GCUCCUCCGUGUUAAUAUCAAGCACUAGUACGGCAAGUUGAUGUUGCUGCCAUCUUGGCAUCUAAUUGGAGCCCUCCUAGUGCUAACGGCAACUGCGGGGGACUCCACCAA---UAAGAU ..((((((((..........((((((((...(((...(..((...(.((((.....)))).)..))..).)))...))))))))...(....).)))))))).........---...... ( -39.10) >DroMoj_CAF1 113750 91 - 1 --------------------------AAUACAGCAAGCUGAUGUUGCUACCGUCUUGGCAUCUAAUUGGAGCCCUGCUAGUGCUGACGGCAACAGCGGGGGACUCCACCAA---CAAGAU --------------------------.....(((((.(....))))))...((((((.........((((((((((((..(((.....)))..)))))))..)))))....---)))))) ( -30.52) >DroPer_CAF1 75520 99 - 1 ---------------------CCAGAAGAACGGCAAGUUGAUGUUGCUGCCAUCUUGGCAUCUAAUUGGGGCCCUCCUCGUGCUCACGGCCACAGCGGGGGACGCCACCAACAACAAGAU ---------------------..........((((.((.......))))))((((((........(((((((..(((((((((.....))....)))))))..))).))))...)))))) ( -29.40) >consensus __________________________AGAACGGCAAGUUGAUGUUGCUGCCAUCUUGGCAUCUAAUUGGGGCCCUCCUAGUGCUCACGGCAACAGCGGGGGACUCCACCAA___CAAGAU ..............................((((((.......))))))..((((((.........((((((((((((..(((.....)))..)).))))).))))).......)))))) (-23.97 = -24.61 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:58 2006