Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,065,515 – 9,065,612 |
Length | 97 |
Max. P | 0.689746 |
Location | 9,065,515 – 9,065,612 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 81.69 |
Mean single sequence MFE | -26.50 |
Consensus MFE | -17.45 |
Energy contribution | -18.15 |
Covariance contribution | 0.70 |
Combinations/Pair | 1.06 |
Mean z-score | -1.85 |
Structure conservation index | 0.66 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.689746 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9065515 97 - 22407834 UGAGCCGCAGGGCAAAUGUGAUACAAGGCUUUAUGCCAAAAAUUGAAAGCCACCUGG-GCAGAAUGGGCGGCAAAGGUAGCAGUUCACAGAUAACCUC ...(((....)))...(((((.((..(((.....)))...........((.((((..-((.(......).))..)))).)).)))))))......... ( -26.30) >DroSec_CAF1 59275 97 - 1 UUAGCCGCAGGGCAAAGGUGAUACAAGGCUUUAUGCCAAAAAUUGAAAGCCACCUGG-GCAGAAUGGGCGGCAAAGGUAGAAGUUCACAGAUAACCUC ...(((((...((..(((((......(((.....)))......(....).)))))..-)).......)))))..((((...............)))). ( -25.46) >DroSim_CAF1 64926 97 - 1 UGAGCCGCAGGGCAAAGGUGAUACAAGGCUUUAUGCCAAAAAUUGAAAGCCACCUGG-GCAGAAUGGGCGGCAAAGGUAGCAGUUCACAGAUAACCUC ...(((((...((..(((((......(((.....)))......(....).)))))..-)).......)))))..((((..(........)...)))). ( -25.90) >DroEre_CAF1 61633 93 - 1 UGAGCCGCAGGGCAAAGGUGAUACAAGGCUUUAUGCCAAAAAUUGAAAGCCACCUGG-GCAGAAUGAGCGGCAAAGGUAGCAGUUCACAGAUAG---- ...(((....)))....((((.((..(((.....)))...........((.((((..-((.(......).))..)))).)).))))))......---- ( -25.30) >DroYak_CAF1 61075 89 - 1 UGAGCCGCUGGGCAAAGGUGGUACAAGGCUUUAUGCCAAAAAUGGAAAGCCACCUGG-GCAGAAUGAGCGGCAAAGGCAGCA---CACAAAAA----- ...((((((.(((..(((((((....(((.....))).....(....))))))))..-))....).))))))..........---........----- ( -30.50) >DroAna_CAF1 64723 81 - 1 UGUGCCUCGGGGCAUACGCGCUACACGGCUUUAUGCCAAAAAUUGAAAGCCAGCUAAAGCAG---UAGCUGCA--------------CAGAUAUAUUU ((((((....)))))).(((((((..((((((.............)))))).((....)).)---)))).)).--------------........... ( -25.52) >consensus UGAGCCGCAGGGCAAAGGUGAUACAAGGCUUUAUGCCAAAAAUUGAAAGCCACCUGG_GCAGAAUGAGCGGCAAAGGUAGCAGUUCACAGAUAACCUC ...(((((..(((((((((........))))).))))...........((........)).......))))).......................... (-17.45 = -18.15 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:57 2006