Locus 3165

Sequence ID 2L_DroMel_CAF1
Location 9,056,941 – 9,057,046
Length 105
Max. P 0.505775
window5033

overview

Window 3

Location 9,056,941 – 9,057,046
Length 105
Sequences 5
Columns 111
Reading direction forward
Mean pairwise identity 83.52
Mean single sequence MFE -25.48
Consensus MFE -15.38
Energy contribution -16.44
Covariance contribution 1.06
Combinations/Pair 1.15
Mean z-score -1.86
Structure conservation index 0.60
SVM decision value -0.05
SVM RNA-class probability 0.505775
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9056941 105 + 22407834
AUUUCUGACUGCAUACUGAUUUGUUGCCUUUGUGCAACCGACACAGAAACAGCAAUAGCACUAGCAACA------GAAACAGAAUCAGAAUCAGAAACGGAAAAGUUCGCC
.((((((((((.((.(((.((((((((.(((((((....).))))))....((....))....))))))------))..))).)))))..)))))))((((....)))).. ( -26.80)
>DroSec_CAF1 50830 105 + 1
AUUUCUGACUGCAUACUGAUUUGUUGCCUUUGUGCAACCGACACAGAAACAGCAAUAGCACUAGCAACA------GUAACAGAAUCAGAAUCAGAAACGGAAAAGUUCGCC
.((((((((((.((.(((..(((((((.(((((((....).))))))....((....))....))))))------)...))).)))))..)))))))((((....)))).. ( -26.40)
>DroSim_CAF1 56393 105 + 1
AUUUCUGACUGCAUACUGAUUUGUUGCCUUUGUGCAACCGACACAGAAACAGCAAUAGCACUAGCAACA------GUAACAGAAUCAGAAUCAGAAACGGAAAAGUUCGCC
.((((((((((.((.(((..(((((((.(((((((....).))))))....((....))....))))))------)...))).)))))..)))))))((((....)))).. ( -26.40)
>DroEre_CAF1 53211 111 + 1
AUUUCUGACUGCAUACUGAUUUGUUGCCUUUGUGCAAGCGACACAGAAACAGCAACAGCAACAGCAAUAGCACUAGCAACAGAAAGAGAAUCAGAAACGGAAAAGUUCGCC
.(((((((...(...((..((((((((....((((..((............))....((....))....))))..)))))))).)).)..)))))))((((....)))).. ( -24.20)
>DroAna_CAF1 56388 92 + 1
AUUUCUGACUGCAUACUGAUUUGUUGCCUUUGUGCAACCGAAACUGAAACAG-------------AUCG------GGUACGGGUGCGGACAAGGGAAUGUAAAAGUUCGCC
..........((..(((....((((.((((((((((.(((...((((.....-------------.)))------)...))).)))..)))))))))))....)))..)). ( -23.60)
>consensus
AUUUCUGACUGCAUACUGAUUUGUUGCCUUUGUGCAACCGACACAGAAACAGCAAUAGCACUAGCAACA______GUAACAGAAUCAGAAUCAGAAACGGAAAAGUUCGCC
.((((((((((....(((..((((((..((((((.......))))))..))))))..((....))..............)))...)))..))))))).............. (-15.38 = -16.44 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:56 2006