Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,055,666 – 9,055,764 |
Length | 98 |
Max. P | 0.970827 |
Location | 9,055,666 – 9,055,764 |
---|---|
Length | 98 |
Sequences | 4 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 95.45 |
Mean single sequence MFE | -21.12 |
Consensus MFE | -18.73 |
Energy contribution | -19.35 |
Covariance contribution | 0.62 |
Combinations/Pair | 1.03 |
Mean z-score | -3.04 |
Structure conservation index | 0.89 |
SVM decision value | 1.66 |
SVM RNA-class probability | 0.970827 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9055666 98 + 22407834 CCGAAAUAUAUUUAUGCAUAUGUUUAAUAUAUUU-UUGCCUGCUUUUUUAGGUUUAUGCAAAUGGUCUGUUUUAGUUUGGAUUUAAGCAGGCAUUUUCU ..((((((((((...((....))..)))))))))-)(((((((((.((((..((...(((.......)))...))..))))...)))))))))...... ( -24.90) >DroSec_CAF1 49565 99 + 1 CCGAAAUAUAUUUAUGCAUAUGUUUAAUAUAUUUUUUGCCUGCUUUUUUAGGUUUAUGCAAAUGCUCUAUUUUAGUUUUGAUUUAAGCAGGCAUUUUCU ..((((((((((...((....))..)))))))))).(((((((((..(((((.(((.((....)).......))).)))))...)))))))))...... ( -22.20) >DroSim_CAF1 55127 99 + 1 CCGAAAUAUAUUUAUGCAUAUGUUUAAUAUAUUUUUUGCCUGCUUUUUUAGGUUUAUGCAAAUGCUCUAUUUUAGUUUUGAUUUAAGCAGGCAUUUUCU ..((((((((((...((....))..)))))))))).(((((((((..(((((.(((.((....)).......))).)))))...)))))))))...... ( -22.20) >DroEre_CAF1 51951 98 + 1 CCAAAAUAUAUAAAUGCACAUGUUUAAUAUAUUUUUU-CCUGCUUUUUUAGGUUUAUGCAAAUGCUCUAUUUUAGUUUUGAUUUAAGCAGGCAUUUUCU ..(((((((((((((......)))).)))))))))..-(((((((..(((((.(((.((....)).......))).)))))...)))))))........ ( -15.20) >consensus CCGAAAUAUAUUUAUGCAUAUGUUUAAUAUAUUUUUUGCCUGCUUUUUUAGGUUUAUGCAAAUGCUCUAUUUUAGUUUUGAUUUAAGCAGGCAUUUUCU ..((((((((((...((....))..)))))))))).((((((((....((((((...(((((........))).))...))))))))))))))...... (-18.73 = -19.35 + 0.62)
Location | 9,055,666 – 9,055,764 |
---|---|
Length | 98 |
Sequences | 4 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 95.45 |
Mean single sequence MFE | -16.49 |
Consensus MFE | -14.18 |
Energy contribution | -14.30 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.10 |
Mean z-score | -3.07 |
Structure conservation index | 0.86 |
SVM decision value | 1.35 |
SVM RNA-class probability | 0.945387 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9055666 98 - 22407834 AGAAAAUGCCUGCUUAAAUCCAAACUAAAACAGACCAUUUGCAUAAACCUAAAAAAGCAGGCAA-AAAUAUAUUAAACAUAUGCAUAAAUAUAUUUCGG ......(((((((((.......................................))))))))).-(((((((((.............)))))))))... ( -14.75) >DroSec_CAF1 49565 99 - 1 AGAAAAUGCCUGCUUAAAUCAAAACUAAAAUAGAGCAUUUGCAUAAACCUAAAAAAGCAGGCAAAAAAUAUAUUAAACAUAUGCAUAAAUAUAUUUCGG ......(((((((((.........(((...))).((....))............)))))))))..(((((((((.............)))))))))... ( -18.42) >DroSim_CAF1 55127 99 - 1 AGAAAAUGCCUGCUUAAAUCAAAACUAAAAUAGAGCAUUUGCAUAAACCUAAAAAAGCAGGCAAAAAAUAUAUUAAACAUAUGCAUAAAUAUAUUUCGG ......(((((((((.........(((...))).((....))............)))))))))..(((((((((.............)))))))))... ( -18.42) >DroEre_CAF1 51951 98 - 1 AGAAAAUGCCUGCUUAAAUCAAAACUAAAAUAGAGCAUUUGCAUAAACCUAAAAAAGCAGG-AAAAAAUAUAUUAAACAUGUGCAUUUAUAUAUUUUGG ........(((((((.........(((...))).((....))............)))))))-..(((((((((...............))))))))).. ( -14.36) >consensus AGAAAAUGCCUGCUUAAAUCAAAACUAAAAUAGAGCAUUUGCAUAAACCUAAAAAAGCAGGCAAAAAAUAUAUUAAACAUAUGCAUAAAUAUAUUUCGG .((((.(((((((((.........((.....)).((....))............)))))))))...............((((......)))).)))).. (-14.18 = -14.30 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:53 2006