Locus 3162

Sequence ID 2L_DroMel_CAF1
Location 9,054,364 – 9,054,457
Length 93
Max. P 0.657875
window5028

overview

Window 8

Location 9,054,364 – 9,054,457
Length 93
Sequences 6
Columns 101
Reading direction forward
Mean pairwise identity 83.00
Mean single sequence MFE -16.60
Consensus MFE -10.82
Energy contribution -10.30
Covariance contribution -0.52
Combinations/Pair 1.32
Mean z-score -2.27
Structure conservation index 0.65
SVM decision value 0.26
SVM RNA-class probability 0.657875
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9054364 93 + 22407834
AAAACGUUCGCAACCAUCGAAUCCAUCACGUAAUUAAACUAAAUACGUGAUAUUAACUUGCUACCAAU---CUUAU-----GGUGCAUACACGCAUAUCAA
.........((.............((((((((.(((...))).)))))))).......(((.((((..---....)-----)))))).....))....... ( -17.90)
>DroSec_CAF1 48262 93 + 1
AAAACGUUCGCUACCAUCGAAUCCAUCACGUAAUUAAACUAAAUACGUGAUAUUAACUUGCUACCAAU---AUUAU-----GGUGCAUACACGCAUACCAA
.........((.............((((((((.(((...))).)))))))).......(((.((((..---....)-----)))))).....))....... ( -17.40)
>DroSim_CAF1 53827 88 + 1
AAAACAUUCGCUACCAUCGAAUCCGUCACGUAAUUAAACUAAAUACGUGAUAUUAACUUGCUACCAAU---AUUAU-----GGUGCAUACACGC-----AA
.........((.............((((((((.(((...))).)))))))).......(((.((((..---....)-----)))))).....))-----.. ( -17.70)
>DroEre_CAF1 50707 93 + 1
AAAACGUUCGCUGCCAUCGAAUCCAUCACGUAAUUAAACUAAAUACGUGAUAUUAACUUGCUAGCCAU---CUUGU-----GGCGCAUGCACGCAUUUCAA
.........(((((..........((((((((.(((...))).)))))))).......(((..(((((---...))-----)))))).))).))....... ( -20.90)
>DroYak_CAF1 49687 93 + 1
AAAACGUUCGCUACCAUCGAAUCCAUCACGUAAUUAAACUAAAUACGUGAUAUUAACUUGCUACCAAU---CUUAU-----GGCGCAUACACGCUUUCCAA
.........((.............((((((((.(((...))).)))))))).......(((..(((..---....)-----)).))).....))....... ( -13.90)
>DroAna_CAF1 54003 101 + 1
ACGAUUUUUCCCUUCGAAGAAGCCAUCACGUAAUUAAACUGAAGACGUGAUAUUAACUUGCAACCCAGAGCCUCAUACAUAUGUACAUAUACGCAUCUCAA
.(((.........))).(((.((.(((((((..((.....))..)))))))........((........)).....................)).)))... ( -11.80)
>consensus
AAAACGUUCGCUACCAUCGAAUCCAUCACGUAAUUAAACUAAAUACGUGAUAUUAACUUGCUACCAAU___CUUAU_____GGUGCAUACACGCAUAUCAA
.....(((((.......)))))..((((((((.(((...))).))))))))...............................(((......)))....... (-10.82 = -10.30 +  -0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:52 2006