Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,049,863 – 9,049,961 |
Length | 98 |
Max. P | 0.558845 |
Location | 9,049,863 – 9,049,961 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 82.05 |
Mean single sequence MFE | -23.83 |
Consensus MFE | -16.91 |
Energy contribution | -16.75 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.38 |
Mean z-score | -1.42 |
Structure conservation index | 0.71 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.558845 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9049863 98 + 22407834 GGCCCCUACUCGCGUU-UUUCCAUUCUGUU-UU----AAGGCAGCCUAA-AAAGUAUGCAGUCACAACUGCAUAUAUUUUGUACCACAUUCCGUGGGUUUUUCAA .......(((((((..-........(((((-..----..)))))..(((-((.(((((((((....))))))))).)))))..........)))))))....... ( -23.40) >DroSec_CAF1 43866 98 + 1 GGCCCAUACUCGCGUU-UUUCCAUUCUGUU-UU----AAGGCAGCCUAA-AAAGUAUGCAGUCACAGCUGCAUAUAUUUUGUACCACAUUCCGUGGGUUUUUCAA (((((((.........-........(((((-..----..)))))..(((-((.(((((((((....))))))))).)))))...........)))))))...... ( -24.10) >DroSim_CAF1 49334 98 + 1 GGCCCAUACUCGCGUG-UUUUCAUUCUGUU-UU----AAGGCAGCCUAA-AAAGUAUGCAGUCACAGCUGCAUAUAUUUUGUACCACAUUCCGUGGGUUUUUCAA (((((((......(((-........(((((-..----..)))))..(((-((.(((((((((....))))))))).)))))...))).....)))))))...... ( -25.00) >DroEre_CAF1 46378 99 + 1 GGCCCCAGCUCGCGUU-UUUCCAUUCUGUUUUC----AAGGCAGCCUAA-AAAGAAUGCAGUCGCAGCUGCAUAUAUUUUGAGCCAGAUUCCGUGGGUUUUUCAA ((((((.(((((((((-(((.....(((((...----..))))).....-.))))))))....((....)).........))))..(....)).)))))...... ( -21.80) >DroYak_CAF1 45216 97 + 1 GGCCC-UGUUCGCGUU-UUUCCAUUCUGUU-UC----AAGGCAGCCUAA-AAAGUAUGCAGUCGCAGCUGCAUAUAUUUCGAAUCAGAUUUCGUGGUUUUUUCCA ((...-...(((((..-.......((((.(-((----.(((...)))..-...(((((((((....))))))))).....))).))))...)))))......)). ( -22.70) >DroAna_CAF1 50084 103 + 1 UCCUC-AACUUGGAUUGGUUUUUUUUUGGU-UUGUAAAAAACUGCCUAAAAAAGUAUGCAGUCGCAGCUGCAUCCAUGUUGUGCCAAAUUCCCAGAGUUUGCCAA ....(-(((.((((..(((..(((((((..-...)))))))..)))..........((((((....)))))))))).))))((.(((((((...))))))).)). ( -26.00) >consensus GGCCC_UACUCGCGUU_UUUCCAUUCUGUU_UU____AAGGCAGCCUAA_AAAGUAUGCAGUCACAGCUGCAUAUAUUUUGUACCACAUUCCGUGGGUUUUUCAA .......(((((((...........(((((.........))))).........(((((((((....)))))))))................)))))))....... (-16.91 = -16.75 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:51 2006