Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,037,262 – 9,037,378 |
Length | 116 |
Max. P | 0.999865 |
Location | 9,037,262 – 9,037,378 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 93.45 |
Mean single sequence MFE | -24.16 |
Consensus MFE | -22.61 |
Energy contribution | -22.33 |
Covariance contribution | -0.28 |
Combinations/Pair | 1.19 |
Mean z-score | -2.43 |
Structure conservation index | 0.94 |
SVM decision value | 4.30 |
SVM RNA-class probability | 0.999865 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9037262 116 - 22407834 UCCACCAAUCAAGCUUAGUGCUUACAAUCUAUCAGAAUUGCUGAUUAAAUGCGGCUCUUUAAACUCAUUUCAACUGCCGUAACCCAAUCACAUCAGCAGUAAGCCACUUUAGGUAA ...(((((....(((((.((((........(((((.....)))))....((((((....................)))))).............)))).)))))....)).))).. ( -25.05) >DroSec_CAF1 31367 116 - 1 UUCUACAAUCAAGCUUAGUGCUUACAAUCUAUCAGAAUUGCUGAUUAAAUGCGGCUCUUUAAACUCAUUUCAACUGCCGUAACCCAAUCACAUCAGCAGUAAGCCACUUUAGGUAA ............(((((((((((((..((.....))..(((((((....((((((....................))))))..........)))))))))))).))))..)))).. ( -24.59) >DroSim_CAF1 35170 116 - 1 UUCUACAAUCAAGCCUAGUGCUUACAAUCUAUCAGAAUUGCUGAUUAAAUGCGGCUCUUUAAACUCAUUUCAACUGCCGUAACCCAAUCACAUCAGCAGUAAGCCACUUUAGGUAA ............(((((((((((((..((.....))..(((((((....((((((....................))))))..........)))))))))))).))))..)))).. ( -27.29) >DroEre_CAF1 33794 116 - 1 UCCUACAAUCAAGCUCGGUGUUUGCCAUCUCUCAGAAUUGCUGAUUAAAUGCGGCUCUUUAAACUCAUUUCAGCUGCCGUAACCCAAUCACAUCAGCAGUAAGCCACUUUAGGUAA .((((.......(((.(((....)))..........(((((((((....((((((....................))))))..........))))))))).))).....))))... ( -22.49) >DroYak_CAF1 32211 116 - 1 UCCUACGACCAAACUCAAUGUUUACAAUCACUCAGAAUUGCUGAUUAAAUGCGGCUCUUUAAACUCAUUUCAACUGCCGUAACCCAAUCACAUCAGCAGUAAGCCACUUUAGGCAA ..........((((.....)))).............(((((((((....((((((....................))))))..........)))))))))..(((......))).. ( -21.39) >consensus UCCUACAAUCAAGCUUAGUGCUUACAAUCUAUCAGAAUUGCUGAUUAAAUGCGGCUCUUUAAACUCAUUUCAACUGCCGUAACCCAAUCACAUCAGCAGUAAGCCACUUUAGGUAA ............((((((.((((((..((.....))..(((((((....((((((....................))))))..........)))))))))))))....)))))).. (-22.61 = -22.33 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:46 2006