Locus 3158

Sequence ID 2L_DroMel_CAF1
Location 9,032,493 – 9,032,586
Length 93
Max. P 0.890753
window5021

overview

Window 1

Location 9,032,493 – 9,032,586
Length 93
Sequences 6
Columns 101
Reading direction forward
Mean pairwise identity 87.84
Mean single sequence MFE -15.00
Consensus MFE -13.40
Energy contribution -13.15
Covariance contribution -0.25
Combinations/Pair 1.14
Mean z-score -1.81
Structure conservation index 0.89
SVM decision value 0.96
SVM RNA-class probability 0.890753
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9032493 93 + 22407834
GGGAACUUUUGGGGUCAUUUAUCAAACGAUAAACCCUUUCGUCCCAUUCAAACCUUAACCUUGUUUCGCUCCUUUACC------CUCUUUCUU--UUAAAU
((((......(((((...(((((....))))))))))....)))).................................------.........--...... ( -15.90)
>DroSec_CAF1 26643 93 + 1
GGGAACAUCUGGGGCCAUUUAUCAAACGAUAAACCCUUUUGUCCCACUCAAACCUUAACCUUGUUUCGCUCCUUUACC------CUCUUUCUU--UUAAGU
((((.((...((((...((((((....))))))))))..)))))).................................------.........--...... ( -16.40)
>DroSim_CAF1 30390 94 + 1
GGGAACUUCUGGGGCCAUUUAUCAAAAGAUAAACCCUUUUGUCCCACUCAAACCUUAACCUUGUUUCGCUCCUUUACC------CUCUUUCUUU-UUAAGU
((((......((((...((((((....))))))))))....)))).................................------..........-...... ( -15.10)
>DroEre_CAF1 29101 93 + 1
GGGAACUUCUGGGGCCAUUUAUCAAACGAUAAACCCUUUUGUCCCACUCAAACCUUAACCUUGUUUCGCUCCUUUACC------CGCUUUCUU--UUAAAC
((((......((((...((((((....))))))))))....)))).................................------.........--...... ( -15.10)
>DroYak_CAF1 27471 93 + 1
GGGAACUUUUGGGGCCAUUUAUCAAACGAUAAACCCUUUUGUUCCACUCAAACCUUAACCUUGUUUCGCUCCUUUACC------CGCUUUCUU--UUGAAU
.(((((....((((...((((((....))))))))))...))))).................................------.........--...... ( -16.00)
>DroAna_CAF1 31060 101 + 1
AAGAACUUCGGGGGCCAUUUAUCAAACGAUAAACCCUUUUGUCCUACUCAAGCCUUAACCUUGUUUCACUCCUCCACCUCUUACCACUUCCUCCAGCAAAG
.........(((((...((((((....))))))...............((((.......)))).......))))).......................... ( -11.50)
>consensus
GGGAACUUCUGGGGCCAUUUAUCAAACGAUAAACCCUUUUGUCCCACUCAAACCUUAACCUUGUUUCGCUCCUUUACC______CUCUUUCUU__UUAAAU
((((......((((...((((((....))))))))))....))))........................................................ (-13.40 = -13.15 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:45 2006