Locus 3157

Sequence ID 2L_DroMel_CAF1
Location 9,032,050 – 9,032,146
Length 96
Max. P 0.988414
window5020

overview

Window 0

Location 9,032,050 – 9,032,146
Length 96
Sequences 6
Columns 96
Reading direction forward
Mean pairwise identity 93.40
Mean single sequence MFE -27.80
Consensus MFE -24.12
Energy contribution -24.63
Covariance contribution 0.50
Combinations/Pair 1.14
Mean z-score -2.56
Structure conservation index 0.87
SVM decision value 2.12
SVM RNA-class probability 0.988414
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9032050 96 + 22407834
UUGCCGAGAAUCCAUUGACUGUCUUCAGUUGCUUGUAAAAUUGCAUUUGUCGAUGCGAUUGAUAUGAAGCUGAAUUAGUGGAAAUGUGGCAUAGAU
.(((((....((((((((.....(((((((...(((..(((((((((....))))))))).)))...)))))))))))))))....)))))..... ( -30.30)
>DroSec_CAF1 26200 96 + 1
UCGCCGAGAAUCCAUUGACUGUCUUCAGUUGCUUGUAAAAUUGCAUUUGUCGAUGCGAUUGAUAAGAAGCUGAAUUAGUGGAAAUGUGGCAUAGAU
..((((....((((((((.....(((((((.(((((..(((((((((....))))))))).))))).)))))))))))))))....))))...... ( -33.40)
>DroSim_CAF1 29929 96 + 1
UCGCCGAGAAUCCAUUGACUGUCUUCAGUUGCUUGUAAAAUUGCAUUUGUCGAUGCGAUUGAUAUGAAGCUGAAUUAGUGGAAAUGUGGCAUAGAU
..((((....((((((((.....(((((((...(((..(((((((((....))))))))).)))...)))))))))))))))....))))...... ( -29.90)
>DroEre_CAF1 28639 96 + 1
UCGCGGAAAAUGCAUUGACUGUCUGCAGUUGCUUGUAAAAGUGCAUUUGUCGAUGCGAUUGAUAGGAAGCUGAAUUAGUGGAAAUGUGGCAUAGAU
(((((.....(((((((((....((((.((........)).))))...)))))))))((((((((....))..)))))).....)))))....... ( -22.30)
>DroYak_CAF1 27028 96 + 1
UCGCCGAGAAUCCAUUGACUGUCUUCAGUUGCUUGUAAAAUUGCAUUUGUCGAUGCGAUUGAUACGAAGCUGAAUUAGUGGAAAUGUGGCAUAGAU
..((((....((((((((.....(((((((..(((((.(((((((((....)))))))))..))))))))))))))))))))....))))...... ( -32.20)
>DroAna_CAF1 30618 94 + 1
UGGCCAAG--UUUAUUGUCUGUCUUCAGUUGCUUGUAAAAUUGAAUUUGUCGAUUCGAUUGAUAUGAUGCUGAAUUAGUGGAAAUGUGGAAUAGAU
...(((.(--(((.....(((..((((((...(..((.(((((((((....)))))))))..))..).)))))).)))...)))).)))....... ( -18.70)
>consensus
UCGCCGAGAAUCCAUUGACUGUCUUCAGUUGCUUGUAAAAUUGCAUUUGUCGAUGCGAUUGAUAUGAAGCUGAAUUAGUGGAAAUGUGGCAUAGAU
..((((....((((((((.....(((((((........(((((((((....))))))))).......)))))))))))))))....))))...... (-24.12 = -24.63 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:44 2006