Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,031,723 – 9,031,828 |
Length | 105 |
Max. P | 0.586603 |
Location | 9,031,723 – 9,031,828 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 81.87 |
Mean single sequence MFE | -44.12 |
Consensus MFE | -24.56 |
Energy contribution | -27.06 |
Covariance contribution | 2.50 |
Combinations/Pair | 1.00 |
Mean z-score | -2.26 |
Structure conservation index | 0.56 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.586603 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9031723 105 - 22407834 UCGCCCCGCUGUCGCUUAAACGUCGCCCCAGGAAAAUCGCUGG-GGGGGCGGC--------GGAUAGGGACGGGGCGUGGCCG-AAAUACAAAUGGAGUAAUUCUUCUGGGCAUA ..(((((...(((.((((..(((((((((.((.......))..-.))))))))--------)..))))))))))))(((.(((-((.(((.......))).)))....)).))). ( -45.00) >DroSec_CAF1 25879 104 - 1 UCGCCCCACUGUCGCUUAAACGUCGCCCCAGGAAAAUCGCUGG-G-GGGCGGC--------GGAUAGGGACGGGGCGUGGCCG-AAAUACAAAUGGAGGAAUUCUUCUGGGCAUA .((((((...(((.((((..(((((((((.((.......))..-)-)))))))--------)..)))))))))))))..((((-.....)....(((((....))))).)))... ( -46.70) >DroSim_CAF1 29607 105 - 1 UCGCCCCGCUGUCGCUUAAACGUCGCCCCAGGAAAAUCGCUGG-GGGGGCGGC--------GGAUAGGGACGGGGCGUGGCCG-AAAUACAAAUGGAGGAAUUCUUCUGGGCAUA .((((((...(((.((((..(((((((((.((.......))..-.))))))))--------)..)))))))))))))..((((-.....)....(((((....))))).)))... ( -46.70) >DroEre_CAF1 28345 102 - 1 UCGCCCCGCUGUCGCUUAAACGUCGCCCCAGGAAAAACGCUG---GGGGCGGC--------GGAUAGGGACGGGGCGUGGCCG-AAAUACAAAUGGAUAAAUUCUUCUGGGCAU- .((((((...(((.((((..(((((((((.((.......)).---))))))))--------)..)))))))))))))..((((-.....)....(((........))).)))..- ( -43.10) >DroYak_CAF1 26706 106 - 1 UCGCCCCGCUGUCGCUUAAACGUCGCCCCAGGAAAAUCACUGGCGGGGGCGGC--------GGAUAGUGACGGGGCGGGGCCG-AAAUACAAAUGCAGCAACUCUACUGGGCAUA ((((((((((((((((....(((((((((.((.......))....))))))))--------)...))))))..))))))).))-).......((((..((.......)).)))). ( -48.80) >DroPer_CAF1 29859 103 - 1 UCGCCCGGCUGUCGCUUAAAUGUCGCCCCGAGGA-GGCGCCAG---AGCCCGCCAAGGGUUGGUAAAGUGCAAGGCGUGGCAGCGAAUACAAAUGGG--AAAUCUGUUG------ ...((((((((((((.........((((....).-)))(((..---(((((.....))))).((.....))..)))))))))))(....)...))))--..........------ ( -34.40) >consensus UCGCCCCGCUGUCGCUUAAACGUCGCCCCAGGAAAAUCGCUGG_GGGGGCGGC________GGAUAGGGACGGGGCGUGGCCG_AAAUACAAAUGGAGGAAUUCUUCUGGGCAUA .((((((((((((........((((((((.((.......))....)))))))).........)))))...)))))))..(((...........................)))... (-24.56 = -27.06 + 2.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:43 2006