Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,993,449 – 8,993,545 |
Length | 96 |
Max. P | 0.915760 |
Location | 8,993,449 – 8,993,545 |
---|---|
Length | 96 |
Sequences | 4 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 82.47 |
Mean single sequence MFE | -26.88 |
Consensus MFE | -17.80 |
Energy contribution | -19.05 |
Covariance contribution | 1.25 |
Combinations/Pair | 1.17 |
Mean z-score | -2.27 |
Structure conservation index | 0.66 |
SVM decision value | 1.10 |
SVM RNA-class probability | 0.915760 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8993449 96 + 22407834 AAGAACACAAGGAUCGCAGGAUUCUUCUUAAUUUUGAGCAAGAAGUCCUAUUGCAAACGGAGUAUUCAUAGAAUGCUCUUAGUCACGAUUUUGUUG ...((((...((((((.(((((((((((((....)))).))).)))))).........(((((((((...)))))))))......)))))))))). ( -23.90) >DroSec_CAF1 37545 93 + 1 AUGAACACAAGGAUCGGAGGACUCUUCUUAAUUUUGAACAAGAAGUCCUGUUGAGAAGGGAGUAUUCAUAGAAUGCUCUUCACCGCGAGCUU---G .......((((..(((..((...(((((((((...(.((.....)).).)))))))))(((((((((...)))))))))...)).))).)))---) ( -25.60) >DroSim_CAF1 30957 95 + 1 AUGAAUCCAA-AAUCGGAGGACUCUUUUUAAUUUUGAGCAGGAAGUCCUGUUGAGAAGGGUGUAUUCAUAGAAUGCUCUUCGCCACGAUUUUGUUG .......(((-(((((..((((((((((((.......(((((....)))))))))))))))((((((...))))))......)).))))))))... ( -28.71) >DroYak_CAF1 56322 96 + 1 AUAAACCCAAGCAUCAGAGGACUCUUCUUAUUUCUGAGCAAGAAGUCCUGUGGCAAAUGGAAUAUUCACAGAAUGCUCUUCGCCACGAGUUUGUUG .......(((((.((..(((((((((((((....)))).))).))))))(((((....(((.(((((...))))).)))..))))))))))))... ( -29.30) >consensus AUGAACACAAGGAUCGGAGGACUCUUCUUAAUUUUGAGCAAGAAGUCCUGUUGAAAAGGGAGUAUUCAUAGAAUGCUCUUCGCCACGAGUUUGUUG .........(((((((.(((((((((((((....)))).))).)))))).........(((((((((...)))))))))......))))))).... (-17.80 = -19.05 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:32 2006