Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 900,828 – 900,988 |
Length | 160 |
Max. P | 0.995752 |
Location | 900,828 – 900,948 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 97.83 |
Mean single sequence MFE | -51.96 |
Consensus MFE | -48.62 |
Energy contribution | -48.66 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.03 |
Mean z-score | -2.02 |
Structure conservation index | 0.94 |
SVM decision value | 2.61 |
SVM RNA-class probability | 0.995752 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 900828 120 - 22407834 CGAUACCACAGGAGUAGGUGUAGUCGAAGGUGGAGAACUGCUCGUGGGCGGGGGCCACGUACGGCACCACCAUGAAGAACAUCUGCAUGGGCAUGCCCUUCUGCCAGCCCAUGGGCAGGA .....((((..((.((....)).))....))))....((((((((((((...(((.......((((...(((((.((.....)).)))))...)))).....))).)))))))))))).. ( -49.70) >DroSec_CAF1 28981 120 - 1 CGAUGCCGCAGGAGUAGGUGUAGUCGAAGGUGGAGAACUGCUCGUGGGCGGGGGCCACGUACGGCACCACCAUGAAGAACAUCUGCAUGGGCAUGCCCUUCUGCCAGCCCAUGGGCAGGA .....((((((((((((((((..(((..(((((....(((((....)))))..(((......))).))))).)))...))))))))..(((....)))))))))..(((....))).)). ( -51.70) >DroSim_CAF1 25325 120 - 1 CGAUGCCGCAGGAGUAGGUGUAGUCGAAGGUGGAGAACUGCUCGUGGGCGGGGGCCACGUACGGCACCACCAUGAAGAACAUCUGCAUGGGCAUGCCCUUCUGCCAGCCCAUGGGCAGGA .....((((((((((((((((..(((..(((((....(((((....)))))..(((......))).))))).)))...))))))))..(((....)))))))))..(((....))).)). ( -51.70) >DroEre_CAF1 32498 120 - 1 CGAUGCCGCAGGAGUAGGUGUAGUCGAAGGUGGAGAACUGCUCGUGGGCGGGGGCCACGUAGGGCACCACCAUGAAGAACAUCUGCAUGGGCAUGCCCUUCUGCCAGCCCAUGGGCAGGA ((((..(((........)))..))))...........((((((((((((...(((.....((((((...(((((.((.....)).)))))...))))))...))).)))))))))))).. ( -55.60) >DroYak_CAF1 29405 120 - 1 CGAUGCCGCAGGAGUAGGUGUAGUCGAAGGUGGAGAACUGCUCGUGGGCGGGGGCCACAUAGGGGACAACCAUGAAGAACAUCUGCAUGGGCAUGCCCUUCUGCCAGCCCAUGGGCAGGA ((((..(((........)))..))))...........((((((((((((...(((.....((((.(...(((((.((.....)).)))))...).))))...))).)))))))))))).. ( -51.10) >consensus CGAUGCCGCAGGAGUAGGUGUAGUCGAAGGUGGAGAACUGCUCGUGGGCGGGGGCCACGUACGGCACCACCAUGAAGAACAUCUGCAUGGGCAUGCCCUUCUGCCAGCCCAUGGGCAGGA ((((..(((........)))..))))...........((((((((((((...(((.......((((...(((((.((.....)).)))))...)))).....))).)))))))))))).. (-48.62 = -48.66 + 0.04)
Location | 900,868 – 900,988 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.92 |
Mean single sequence MFE | -50.78 |
Consensus MFE | -45.82 |
Energy contribution | -46.26 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.03 |
Mean z-score | -1.62 |
Structure conservation index | 0.90 |
SVM decision value | 1.52 |
SVM RNA-class probability | 0.961087 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 900868 120 - 22407834 UAGCCGAAGGGCAGGCUGUCCACGUAGCGCGCUCCGGAUCCGAUACCACAGGAGUAGGUGUAGUCGAAGGUGGAGAACUGCUCGUGGGCGGGGGCCACGUACGGCACCACCAUGAAGAAC ..(((....))).(((((((((((.((((..(((((..(.((((..(((........)))..)))).)..)))))...)))))))))))))(((((......))).)).))......... ( -50.60) >DroSec_CAF1 29021 120 - 1 UAGCCGAAGGGCAGGCUGUCCACGUAGCGGGCUCCGGACCCGAUGCCGCAGGAGUAGGUGUAGUCGAAGGUGGAGAACUGCUCGUGGGCGGGGGCCACGUACGGCACCACCAUGAAGAAC ..(((....))).(((((((((((.(((((.((((..(((((((..(((........)))..))))..)))))))..))))))))))))))(((((......))).)).))......... ( -53.00) >DroSim_CAF1 25365 120 - 1 UAGCCGAAGGGCAGGCUGUCCACGUAGCGGGCUCCGGAUCCGAUGCCGCAGGAGUAGGUGUAGUCGAAGGUGGAGAACUGCUCGUGGGCGGGGGCCACGUACGGCACCACCAUGAAGAAC ..(((....))).(((((((((((.(((((.(((((..(.((((..(((........)))..)))).)..)))))..))))))))))))))(((((......))).)).))......... ( -53.10) >DroEre_CAF1 32538 120 - 1 UAGCCGAAGGGCAUGCUGUCCACGAAGCGGGCUCCGGAUCCGAUGCCGCAGGAGUAGGUGUAGUCGAAGGUGGAGAACUGCUCGUGGGCGGGGGCCACGUAGGGCACCACCAUGAAGAAC ..(((....)))...((((((((((.((((.(((((..(.((((..(((........)))..)))).)..)))))..))))))))))))))(((((......))).))............ ( -51.50) >DroYak_CAF1 29445 120 - 1 UAGCCGAAGGGCAUGCUGUCCACGAAGCGUGCUCCGGAUCCGAUGCCGCAGGAGUAGGUGUAGUCGAAGGUGGAGAACUGCUCGUGGGCGGGGGCCACAUAGGGGACAACCAUGAAGAAC ..(((....))).(.((((((((((.((((.(((((..(.((((..(((........)))..)))).)..))))).)).)))))))))))).)....(((.((......)))))...... ( -45.70) >consensus UAGCCGAAGGGCAGGCUGUCCACGUAGCGGGCUCCGGAUCCGAUGCCGCAGGAGUAGGUGUAGUCGAAGGUGGAGAACUGCUCGUGGGCGGGGGCCACGUACGGCACCACCAUGAAGAAC ..(((....)))...(((((((((.((((..(((((..(.((((..(((........)))..)))).)..)))))...)))))))))))))(((((......))).))............ (-45.82 = -46.26 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:48 2006