Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,982,495 – 8,982,589 |
Length | 94 |
Max. P | 0.938422 |
Location | 8,982,495 – 8,982,589 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 91.91 |
Mean single sequence MFE | -21.16 |
Consensus MFE | -18.74 |
Energy contribution | -19.38 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.05 |
Mean z-score | -1.57 |
Structure conservation index | 0.89 |
SVM decision value | 1.29 |
SVM RNA-class probability | 0.938422 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8982495 94 - 22407834 UAAAAUGCAGACUAAACAAGACACCAAAUUGUCUUGGCCACCAAAGUGGAUGGCUCACUGUUUGUUAACUGAAUUAGCCGCCCUCCUUCCCUCA ......((((((....(((((((......)))))))((((((.....)).)))).....))))))............................. ( -21.40) >DroSec_CAF1 26780 94 - 1 UAAAAUGCAGACUAAACAAGACACCAAAAUGUCUUGGCCACCAAAGUGGAUGGCUCAGAGUUUGUUAACUGAAUUAGCCGGCCUCCUUCGCUCA ......(((((((...(((((((......)))))))((((((.....)).))))....)))))))..............(((.......))).. ( -23.20) >DroSim_CAF1 20089 94 - 1 UAAAAUGCAGACUAAACAAGACACCAAAAUGUCUUGGCCACCAAAGUGGAUGGCUCAGAGUUUGUUAACUGAAUUAGCCGGCCUCCUUCCCUCA ......(((((((...(((((((......)))))))((((((.....)).))))....)))))))............................. ( -22.80) >DroEre_CAF1 49245 94 - 1 UAAAAUACACACCAAACCAGACACCAAAAUGUCUUGGCCACCAAAGCGGAUGGCUCUGUGCUUGUUAACUGAAUUAGCUGGCCUGCUUCCCUCA ..................(((((......))))).(((((.....(((((....)))))(((.(((.....))).))))))))........... ( -18.10) >DroYak_CAF1 44914 94 - 1 UAAAAUGCACACUAAACAAGACACCAAAAUGUCUUGGCCACCAAAACGGAUGGCUCUGAGUUUGUUAACUGAAUUAGCUGCCCUCCUACCCUCA ......(((..((((.(((((((......)))))))((((((.....)).))))..(.((((....)))).).)))).)))............. ( -20.30) >consensus UAAAAUGCAGACUAAACAAGACACCAAAAUGUCUUGGCCACCAAAGUGGAUGGCUCAGAGUUUGUUAACUGAAUUAGCCGGCCUCCUUCCCUCA ......((((((....(((((((......)))))))((((((.....)).)))).....))))))............................. (-18.74 = -19.38 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:27 2006