Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,945,046 – 8,945,164 |
Length | 118 |
Max. P | 0.953477 |
Location | 8,945,046 – 8,945,164 |
---|---|
Length | 118 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 71.19 |
Mean single sequence MFE | -32.70 |
Consensus MFE | -24.20 |
Energy contribution | -22.77 |
Covariance contribution | -1.43 |
Combinations/Pair | 1.30 |
Mean z-score | -1.35 |
Structure conservation index | 0.74 |
SVM decision value | 1.43 |
SVM RNA-class probability | 0.953477 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8945046 118 - 22407834 GUGAAUGAACAUCCAU--AUUAAUUCAGUCUACAUUCUUCGCAGGUCGCUCAAACAAGCGAUCAUUUGUGUCCCUGAUUGUGGGCCUGAUCGUGGGCUUCUGCCUGGCGGAGCUGUUCGU ....(((((((.((((--......((((((((((.((..(((((((((((......)))))))...)))).....)).)))))).))))..))))(((.((((...)))))))))))))) ( -38.90) >DroEre_CAF1 1523 116 - 1 ---AAU-UACAUUUAUAAACUAAUUCAGCCAACAUUUUCCGCAGGGCGCUCAAACAAGCGAUCAUUUGUGUCCCUGAUCGUGGGCCUGAUCGUGGGCUUCUGCCUGGCGGAGCUGUUCGU ---...-....................((.((((..((((((.((((..........(((((((..........)))))))((((((......))))))..)))).)))))).)))).)) ( -33.30) >DroWil_CAF1 58330 98 - 1 ------------------UUUAUUUCUGUGUAUUUUU----UAGGGCGUUCCAAUAAACGAUCGUUUGUGUCCCUCAUUGUGGGACUGGUUGUAGGCUUUUGCCUGGCCGAACUGUUUGU ------------------...................----...(((...(((((((((....))))))(((((.......))))))))...(((((....))))))))........... ( -25.90) >consensus ___AAU__ACAU__AU__AUUAAUUCAGUCUACAUUUU_CGCAGGGCGCUCAAACAAGCGAUCAUUUGUGUCCCUGAUUGUGGGCCUGAUCGUGGGCUUCUGCCUGGCGGAGCUGUUCGU ...........................................((((((((......(((((((.....(.(((.......))).))))))))((((....))))....)))).)))).. (-24.20 = -22.77 + -1.43)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:20 2006