Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,943,705 – 8,943,927 |
Length | 222 |
Max. P | 0.920424 |
Location | 8,943,705 – 8,943,824 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.00 |
Mean single sequence MFE | -22.65 |
Consensus MFE | -18.82 |
Energy contribution | -19.19 |
Covariance contribution | 0.37 |
Combinations/Pair | 1.04 |
Mean z-score | -1.87 |
Structure conservation index | 0.83 |
SVM decision value | 0.56 |
SVM RNA-class probability | 0.780882 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8943705 119 - 22407834 UACCACUUCCAUAAAACAACUUUAUGUCCUCGGUCCAUUUCUUCACAUCCCGAAAAGGUUUCGU-UUGGGCUCCACUGCGGAGCUCUUCCCUUUUGUACAAAUACCAAAACUAGUUAUAA .(((.....((((((.....))))))...((((................))))...)))...((-(((((((((.....))))))).........(((....)))..))))......... ( -19.29) >DroSec_CAF1 154201 118 - 1 UACCACUUCCAUAAACCAACUUUAUGUCCUCGGUCCAUUUCUUCACAUCCCGAA-AGGUUUCGU-UUGGACUCCACUACGGAGCUCUUUCCUUUUGUACAAAUACCAAAACUAGGUAUAA ((((.....((((((.....)))))).....(((..((((....(((....(((-(((((((((-.(((...)))..))))))).)))))....)))..))))))).......))))... ( -23.40) >DroSim_CAF1 153675 118 - 1 UACCACUUCCAUAAACCAACUUUAUGUCCUCGGUCCAUUUCUUCACAUCCCGAA-AGGUUUCGU-UUGGGCUCCACUGCGGAGCUCUUUCCUUUUGUACAAAUACCAAAACUAGGUAUAA .(((.....((((((.....)))))).....)))................((((-(((......-..(((((((.....)))))))...))))))).....(((((.......))))).. ( -25.50) >DroYak_CAF1 158879 119 - 1 UACCACUUCCAUUAAUCAACUUUAUGUCGUCGGUCCAUUUAUCCACAUCCCGAA-AGGUUUCGUUUUGGGCUCUAUUGUAGAGCUCGUUCCUUUUGUACAAAUACCAAAACUAGGUAUAA ((((........................((.((.........))))...((...-.))....(((((((((((((...))))))..((.........)).....)))))))..))))... ( -22.40) >consensus UACCACUUCCAUAAACCAACUUUAUGUCCUCGGUCCAUUUCUUCACAUCCCGAA_AGGUUUCGU_UUGGGCUCCACUGCGGAGCUCUUUCCUUUUGUACAAAUACCAAAACUAGGUAUAA .(((.....((((((.....))))))...((((................))))...)))........(((((((.....)))))))...............(((((.......))))).. (-18.82 = -19.19 + 0.37)
Location | 8,943,824 – 8,943,927 |
---|---|
Length | 103 |
Sequences | 4 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 95.49 |
Mean single sequence MFE | -22.15 |
Consensus MFE | -20.70 |
Energy contribution | -20.32 |
Covariance contribution | -0.38 |
Combinations/Pair | 1.07 |
Mean z-score | -1.99 |
Structure conservation index | 0.93 |
SVM decision value | 1.13 |
SVM RNA-class probability | 0.920424 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8943824 103 - 22407834 CACACGGGUAGACACCU-AAUGUACAUAUAGCUUUUGUAUAUAUCAAUAGAUAAUUGUGUAAUCCAACACGAUGAAUCGCUACAAGCUAUCCUAGCAAUGCCAU .....((((((.(....-.(((((((.........))))))).......(((.(((((((......)))))))..))))))))..((((...))))....)).. ( -21.60) >DroSec_CAF1 154319 103 - 1 CACACGGGUAGACCCGU-AAUGUACAUAUAGCUUUUGUAUAUAUCAAUAGAUAAUUGUGUAAUCCAACACGAUGAAUCGCUACAAGCUAUCCUAGCAAUGCCAU ...(((((....)))))-..(((....((((((..((((..((((....))))(((((((......))))))).......))))))))))....)))....... ( -24.10) >DroSim_CAF1 153793 103 - 1 CACACGGGUAGACUCCU-AAUGUACAUAUAGCUUUUGUAUAUAUCAAUAGAUAAUUGUGUAAUCCAACACGAUGAAUCGCUACAAGCUAUCCUAGCAAUGCCAU .....((((((......-.(((((((.........))))))).......(((.(((((((......)))))))..))).))))..((((...))))....)).. ( -21.30) >DroYak_CAF1 158998 104 - 1 CACACGGGUAGACUCUUCAAUGUACAUAUAGCUUUUGUAUAUAUGAAUAGAUAAUUGUGUAAUCCUACAUGAUAAAUCGCUGCAAGCUAUCCUAGCAAUGCCAU .....((((((.((.(((((((((((.........))))))).)))).))...((..((((....))))..))......))))..((((...))))....)).. ( -21.60) >consensus CACACGGGUAGACUCCU_AAUGUACAUAUAGCUUUUGUAUAUAUCAAUAGAUAAUUGUGUAAUCCAACACGAUGAAUCGCUACAAGCUAUCCUAGCAAUGCCAU .....((((((........(((((((.........))))))).......(((.(((((((......)))))))..))).))))..((((...))))....)).. (-20.70 = -20.32 + -0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:19 2006