Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 900,268 – 900,388 |
Length | 120 |
Max. P | 0.956158 |
Location | 900,268 – 900,388 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 98.17 |
Mean single sequence MFE | -39.68 |
Consensus MFE | -37.66 |
Energy contribution | -37.54 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.06 |
Mean z-score | -1.60 |
Structure conservation index | 0.95 |
SVM decision value | 1.46 |
SVM RNA-class probability | 0.956158 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 900268 120 + 22407834 GUCCAUCGCCCAGGUGUACUUCCAGUUCAUGCACUACCUGCCCAAGUACACCAAGGAGCAGCUCCUGAUGCCCGGCGUGACCAUGAAGAACGUGGAGGUCAGCGACCUAACCACCUACUU (((...((((..(((((((((.(((............)))...)))))))))..((.(((........))))))))).)))..........(((((((((...)))))..))))...... ( -37.70) >DroSec_CAF1 28421 120 + 1 GUCCAUCGCCCAGGUGUACUUCCAGUUCAUGCACUACCUGCCCAAGUACACCAAGGAGCAGCUCCUGAUGCCUGGCGUGACCAUGAAGCACGUGGAGGUCAGCGACCUGACCACCUACUU .....((((((((((((((((.(((............)))...))))))....(((((...)))))...)))))).))))(((((.....))))).((((((....))))))........ ( -39.80) >DroSim_CAF1 24765 120 + 1 GUCCAUCGCCCAGGUGUACUUCCAGUUCAUGCACUACCUGCCCAAGUACACCAAGGAGCAGCUCCUGAUGCCCGGCGUGACCAUGAAGCACGUGGAGGUCAGCGACCUGACCACCUACUU ...((.((((..(((((((((.(((............)))...)))))))))..((.(((........))))))))))).(((((.....))))).((((((....))))))........ ( -40.90) >DroEre_CAF1 31938 120 + 1 GUCCAUCGCCCAGGUGUACUUCCAGUUCAUGCACUACCUGCCCAAGUACACCAAGGAGCAGCUCCUGAUGCCCGGCGUCACCAUGAAGCACGUGGAGGUCAGCGACCUGACCACCUACUU ......((((..(((((((((.(((............)))...)))))))))..((.(((........)))))))))...(((((.....))))).((((((....))))))........ ( -39.70) >DroYak_CAF1 28845 120 + 1 GUCCAUCGCCCAGGUGUACUUCCAGUUCAUGCACUACCUGCCCAAGUACACCAAGGAGCAGCUCCUGAUGCCCGGCGUCACCGUGAAGCACGUGGAGGUCAGCGACCUGACCACCUACUU .((((.((((..(((((((((.(((............)))...)))))))))..((.(((........)))))))))....((((...))))))))((((((....))))))........ ( -40.30) >consensus GUCCAUCGCCCAGGUGUACUUCCAGUUCAUGCACUACCUGCCCAAGUACACCAAGGAGCAGCUCCUGAUGCCCGGCGUGACCAUGAAGCACGUGGAGGUCAGCGACCUGACCACCUACUU ......((((..(((((((((.(((............)))...)))))))))..((.(((........)))))))))...(((((.....))))).((((((....))))))........ (-37.66 = -37.54 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:46 2006