Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,926,602 – 8,926,692 |
Length | 90 |
Max. P | 0.878183 |
Location | 8,926,602 – 8,926,692 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 79.61 |
Mean single sequence MFE | -38.77 |
Consensus MFE | -22.56 |
Energy contribution | -22.67 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.16 |
Mean z-score | -2.28 |
Structure conservation index | 0.58 |
SVM decision value | 0.90 |
SVM RNA-class probability | 0.878183 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8926602 90 - 22407834 ACUCCACUCGCUUCUGGGCGCUACCUUUGCUCAGGUGACUG------GUGGUGGUGUGGG------AGCUGCUGGUAACGGCAGUGCCUCCAUUCACAUGAA .(.(((.((((..(((((((.......))))))))))).))------).)((((((..((------.(((((((....))))))).))..)).))))..... ( -37.60) >DroPse_CAF1 290571 96 - 1 AUUCCACUCGCUUCUGGGCACUACUCCGCUGAAGGUGACUGCUGCUAUUAGUGGUGCUGG------UGCUGGUGGUAGCUACAGUCCCGCCAUUCACAUGCA .........((.....(((((((((..((...((....))...))....))))))))).(------((.((((((..((....)).))))))..)))..)). ( -31.40) >DroSim_CAF1 135821 90 - 1 ACUCCACUCGCUUCUGGGCGCUACCUUUGCUCAGGUGACUG------GUGGUGGUGUGGG------AGGUGCUGGAAACGGCAGUGCCUCCAUUCACAUGAA .(.(((((.((.((((((((.......)))))))).).).)------)))).)(((..((------((((((((....))))...))))))...)))..... ( -39.70) >DroEre_CAF1 144607 90 - 1 ACUCCACGCGCUUCUGGGCGCUACCUUUGCUCAGGUGACUG------GUGGUGGUGUGGG------AGGUGCUGGAAACGGCAGUGCCUCCAUUCACAUGAA .(.(((((((((....)))))..........(((....)))------)))).)(((..((------((((((((....))))...))))))...)))..... ( -42.10) >DroYak_CAF1 141146 102 - 1 ACUCCACACGCUUCUGGGCGCUACCUUUGCCCAGGUGACUGCUGGUGGUGGUGGUGUGGGAGGAGGAGGUGCUGGCAACGGCAGUGCCUCCAUUCACAUGAA .((((.((((((....)))((((((.(..(((((....)))..))..).)))))))))))))..(((((..(((.(...).)))..)))))........... ( -50.40) >DroPer_CAF1 194140 96 - 1 AUUCCACUCGCUUCUGGGCACUACUCCGCUGAAGGUGACUGCUGCUAUUAGUGGUGCUGG------UGCUGGUGGUAGCUACAGUCCCGCCAUUCACAUGCA .........((.....(((((((((..((...((....))...))....))))))))).(------((.((((((..((....)).))))))..)))..)). ( -31.40) >consensus ACUCCACUCGCUUCUGGGCGCUACCUUUGCUCAGGUGACUG______GUGGUGGUGUGGG______AGCUGCUGGUAACGGCAGUGCCUCCAUUCACAUGAA ..............(((((((((((......(((....)))........))))))))............(((((....)))))......))).......... (-22.56 = -22.67 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:12 2006