| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 8,922,158 – 8,922,260 |
| Length | 102 |
| Max. P | 0.910889 |
| Location | 8,922,158 – 8,922,260 |
|---|---|
| Length | 102 |
| Sequences | 5 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 77.45 |
| Mean single sequence MFE | -27.34 |
| Consensus MFE | -20.46 |
| Energy contribution | -20.74 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.95 |
| SVM RNA-class probability | 0.888195 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8922158 102 + 22407834 AAAUGCUUGGAUCUCACAUCCCAUUU------UUUUGAGUGCAUUACCGCAAAAGGGUGCAGUUUCUGUUUUGUUUGCCGUUGCAAUUGCAGUUGCUCUCGAGAGUCU (((((...((((.....)))))))))------(((((((.(((..((.(((((.....((((...))))....))))).))(((....)))..))).))))))).... ( -23.40) >DroSec_CAF1 132352 101 + 1 -------UGGGACUUACAUCCCAUUUUUCUUUUUUUGAGUGCAUUACCACAAAAGGGUGCAGUUGCUGUUUUGUUCGCCGUUGCAAUUGCAGUUGCUCUCGAGAGUCU -------(((((......)))))........((((((((.(((...((......)).(((((((((................)))))))))..))).))))))))... ( -30.09) >DroSim_CAF1 131387 108 + 1 AAAUGCUUGGGACUUACAUCCCAUUUUUCCUUUUUUGAGUGCAUUACCACAAAAGGGUGCAGUUGCUGUUUUGUUUGCCGUUGCAAUUGCAGUUGCUCUCGAGAGUCU .......(((((......)))))........((((((((.(((...((......)).(((((((((................)))))))))..))).))))))))... ( -30.29) >DroEre_CAF1 140190 100 + 1 GAAACAUUUGUUUUUAA-ACCCC------UUUUUUUGAGUGCACCCACACAAAAGGGUGCAGUUGCUGUUUUGUUUG-CGCUGCAAUUGCAGUUGCUCUCCAGAGUCU (((((....)))))...-.....------.......((.(((((((........))))))).))....(((((...(-((((((....)))).)))....)))))... ( -25.70) >DroYak_CAF1 136736 86 + 1 --------------U-A-AAGCG------UUUCUUCGAGUGCAUUACGACAAAAGGGUGCAGUUGCUGUUUUGUUUGCCGCUGCAAUUGCAGUUGCUCUCGAGAGUCU --------------.-.-....(------.((((.((((.(((....(((((((.(((......))).)))))))....(((((....)))))))).)))))))).). ( -27.20) >consensus _AA___UUGGGACUUACAUCCCAUUU___UUUUUUUGAGUGCAUUACCACAAAAGGGUGCAGUUGCUGUUUUGUUUGCCGUUGCAAUUGCAGUUGCUCUCGAGAGUCU ...............................((((((((.(((.....((((((.(((......))).))))))......((((....)))).))).))))))))... (-20.46 = -20.74 + 0.28)
| Location | 8,922,158 – 8,922,260 |
|---|---|
| Length | 102 |
| Sequences | 5 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 77.45 |
| Mean single sequence MFE | -24.48 |
| Consensus MFE | -13.80 |
| Energy contribution | -14.48 |
| Covariance contribution | 0.68 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.10 |
| Structure conservation index | 0.56 |
| SVM decision value | 1.07 |
| SVM RNA-class probability | 0.910889 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8922158 102 - 22407834 AGACUCUCGAGAGCAACUGCAAUUGCAACGGCAAACAAAACAGAAACUGCACCCUUUUGCGGUAAUGCACUCAAAA------AAAUGGGAUGUGAGAUCCAAGCAUUU ........(((.((((((((((((((....))))......(((...))).......)))))))..))).)))....------.....((((.....))))........ ( -21.40) >DroSec_CAF1 132352 101 - 1 AGACUCUCGAGAGCAACUGCAAUUGCAACGGCGAACAAAACAGCAACUGCACCCUUUUGUGGUAAUGCACUCAAAAAAAGAAAAAUGGGAUGUAAGUCCCA------- ........(((.(((((..(((.((((...((..........))...)))).....)))..))..))).))).............((((((....))))))------- ( -25.30) >DroSim_CAF1 131387 108 - 1 AGACUCUCGAGAGCAACUGCAAUUGCAACGGCAAACAAAACAGCAACUGCACCCUUUUGUGGUAAUGCACUCAAAAAAGGAAAAAUGGGAUGUAAGUCCCAAGCAUUU ........(((.(((((..(((((((....))))........((....))......)))..))..))).))).............((((((....))))))....... ( -25.70) >DroEre_CAF1 140190 100 - 1 AGACUCUGGAGAGCAACUGCAAUUGCAGCG-CAAACAAAACAGCAACUGCACCCUUUUGUGUGGGUGCACUCAAAAAAA------GGGGU-UUAAAAACAAAUGUUUC (((((((.(((.((..((((....)))).)-)...............(((((((........)))))))))).......------)))))-))..((((....)))). ( -27.50) >DroYak_CAF1 136736 86 - 1 AGACUCUCGAGAGCAACUGCAAUUGCAGCGGCAAACAAAACAGCAACUGCACCCUUUUGUCGUAAUGCACUCGAAGAAA------CGCUU-U-A-------------- ....(((((((.(((.((((....))))(((((((.......((....)).....)))))))...))).)))).)))..------.....-.-.-------------- ( -22.50) >consensus AGACUCUCGAGAGCAACUGCAAUUGCAACGGCAAACAAAACAGCAACUGCACCCUUUUGUGGUAAUGCACUCAAAAAAA___AAAUGGGAUGUAAGACCCAA___UU_ ........(((.((((((((((((((....))))........((....))......)))))))..))).))).................................... (-13.80 = -14.48 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:09 2006