Locus 3135

Sequence ID 2L_DroMel_CAF1
Location 8,922,023 – 8,922,119
Length 96
Max. P 0.638485
window4981

overview

Window 1

Location 8,922,023 – 8,922,119
Length 96
Sequences 4
Columns 114
Reading direction forward
Mean pairwise identity 77.66
Mean single sequence MFE -19.57
Consensus MFE -11.81
Energy contribution -12.13
Covariance contribution 0.31
Combinations/Pair 1.07
Mean z-score -1.81
Structure conservation index 0.60
SVM decision value 0.22
SVM RNA-class probability 0.638485
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8922023 96 + 22407834
GGCACGAUCCAAUGAACGGAUCUGCUAAUUGUUCAAAUCUAUGCACAAAGAAAAAUUAAUAACUGAAAGAGUAUUUUCUUACA------------UCUAAAGAUCUAA------
((((.(((((.......)))))))))..((((.((......)).))))..............((...((((((......))).------------)))..))......------ ( -15.70)
>DroSec_CAF1 132222 100 + 1
GGCACGAUCCAAUGAACGGAUCUGCUAAUUGUUUAGAUCUAUGCACACAGAAAAAUUAAUAACUGAAAGAAUAUUUUCUUACAAAAUAUUUCAG--------AUCUAA------
((((.(((((.......)))))))))......((((((((.......(((............)))...(((((((((.....))))))))).))--------))))))------ ( -21.80)
>DroSim_CAF1 131229 108 + 1
GGCACGAUCCAAUGAACGGAUCUGCUAAUUGUUCAGAUCUAUGCACACAGAAAAAUUAAUCACUGAAAGAAUAUUUUCUUACAAAAUAUUUUAGAUCUUAAGAUCUAA------
((((.(((((.......))))))))).....(((((.....((....))((........)).))))).(((((((((.....)))))))))((((((....)))))).------ ( -21.80)
>DroEre_CAF1 139916 96 + 1
GGCACGAUCCAAUGAACGGAUCUGCUAAUUGUUCUGGUCUAUGCACAAAGGAAAAUGUAUAAUUGA-CGAAUAUUUUCUUA---------------UU--AGUUCGAAUUAGUC
((((.(((((.......)))))))))..(((..(((((..........((((((((((........-...)))))))))))---------------))--))..)))....... ( -19.00)
>consensus
GGCACGAUCCAAUGAACGGAUCUGCUAAUUGUUCAGAUCUAUGCACAAAGAAAAAUUAAUAACUGAAAGAAUAUUUUCUUACA_____________CU__AGAUCUAA______
((((.(((((.......)))))))))........................................(((((....))))).................................. (-11.81 = -12.13 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:08 2006