Locus 3134

Sequence ID	2L_DroMel_CAF1
Location	8,921,869 – 8,921,965
Length	96
Max. P	0.988224

overview

Window 9

Location	8,921,869 – 8,921,965
Length	96
Sequences	6
Columns	96
Reading direction	forward
Mean pairwise identity	95.07
Mean single sequence MFE	-20.75
Consensus MFE	-18.93
Energy contribution	-19.27
Covariance contribution	0.33
Combinations/Pair	1.07
Mean z-score	-1.01
Structure conservation index	0.91
SVM decision value	0.03
SVM RNA-class probability	0.546280
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8921869 96 + 22407834
ACCGGCGGGUUAAAGUUUUCAUUUGGAGCAUAUUAUGCAUUUUAGCACUAUAAAUCAUCAAUGCAAUCGAUUGCCACAAUCGAUCUUUUGGCCAGU
...(((((((((((((.(((....)))((((...)))))))))))).)).........(((....((((((((...))))))))...))))))... ( -20.90)
>DroSec_CAF1 132068 96 + 1
ACCGGCGGGUUAAAGUUUUCAUUUGGAGCAUAUUAUGCAUUUUAGCACUAUAAAUCAUCAAUGCAAUCGAUUGCCACAAUCGAUCUUUUGGCCAGU
...(((((((((((((.(((....)))((((...)))))))))))).)).........(((....((((((((...))))))))...))))))... ( -20.90)
>DroSim_CAF1 131075 96 + 1
ACCGGCGGGUUAAAGUUUUCAUUUGGAGCAUUUUAUGCAUUUUAGCACUAUAAAUCAUCAAUGCAAUCGAUUGCCACAAUCGAUCUUUUGGCCAGU
...(((((((((((((.(((....)))((((...)))))))))))).)).........(((....((((((((...))))))))...))))))... ( -20.90)
>DroEre_CAF1 139762 96 + 1
ACCGGCGGGUUAAAGUUUUCAUUUGGCGCACAUUAUGCAUUUUAGCACCAUAAAUCAUCAAUGCAUUCGAUUGCCACAAUCGAUCUUUUGGCCAGU
...(((((((((((((...(((.((.....))..))).)))))))).)).........(((.....(((((((...)))))))....))))))... ( -21.90)
>DroYak_CAF1 136347 96 + 1
ACCGGCGGGUUAAAGUUUUCAUUUGGAGCACAUUAUGCAUUUUAGCACUAUAAAUCAUCAAUGCAAUCGAUUGCCACAAUCGAUCUUUUGGCCAGU
...(((((((((((((.(((....)))(((.....))))))))))).)).........(((....((((((((...))))))))...))))))... ( -20.50)
>DroAna_CAF1 134401 94 + 1
-CCGGCGGGUUA-AGUUUUCAACUCGAGUAUAUUAUACAUUUUAGCACCAUAAAUCAUCAAUGCAAUCGAUUGCCACAAUCGAUCUUUGGGCCAGU
-..(((((((((-((...((.....))((((...))))..)))))).))........((((....((((((((...))))))))..)))))))... ( -19.40)
>consensus
ACCGGCGGGUUAAAGUUUUCAUUUGGAGCAUAUUAUGCAUUUUAGCACUAUAAAUCAUCAAUGCAAUCGAUUGCCACAAUCGAUCUUUUGGCCAGU
...(((((((((((((.(((....)))(((.....))))))))))).)).........(((....((((((((...))))))))...))))))... (-18.93 = -19.27 +   0.33)

alignment

secondary structure

dotplot

Window 0

Location	8,921,869 – 8,921,965
Length	96
Sequences	6
Columns	96
Reading direction	reverse
Mean pairwise identity	95.07
Mean single sequence MFE	-23.22
Consensus MFE	-21.94
Energy contribution	-22.11
Covariance contribution	0.17
Combinations/Pair	1.12
Mean z-score	-1.57
Structure conservation index	0.94
SVM decision value	2.11
SVM RNA-class probability	0.988224
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8921869 96 - 22407834
ACUGGCCAAAAGAUCGAUUGUGGCAAUCGAUUGCAUUGAUGAUUUAUAGUGCUAAAAUGCAUAAUAUGCUCCAAAUGAAAACUUUAACCCGCCGGU
((((((.....(((((((((...))))))))).((((.......(((.((((......)))).))).......)))).............)))))) ( -24.04)
>DroSec_CAF1 132068 96 - 1
ACUGGCCAAAAGAUCGAUUGUGGCAAUCGAUUGCAUUGAUGAUUUAUAGUGCUAAAAUGCAUAAUAUGCUCCAAAUGAAAACUUUAACCCGCCGGU
((((((.....(((((((((...))))))))).((((.......(((.((((......)))).))).......)))).............)))))) ( -24.04)
>DroSim_CAF1 131075 96 - 1
ACUGGCCAAAAGAUCGAUUGUGGCAAUCGAUUGCAUUGAUGAUUUAUAGUGCUAAAAUGCAUAAAAUGCUCCAAAUGAAAACUUUAACCCGCCGGU
((((((.....(((((((((...)))))))))(((((...........((((......))))..))))).....................)))))) ( -23.02)
>DroEre_CAF1 139762 96 - 1
ACUGGCCAAAAGAUCGAUUGUGGCAAUCGAAUGCAUUGAUGAUUUAUGGUGCUAAAAUGCAUAAUGUGCGCCAAAUGAAAACUUUAACCCGCCGGU
((((((..((((.(((((((...)))))))................((((((...............))))))........)))).....)))))) ( -22.96)
>DroYak_CAF1 136347 96 - 1
ACUGGCCAAAAGAUCGAUUGUGGCAAUCGAUUGCAUUGAUGAUUUAUAGUGCUAAAAUGCAUAAUGUGCUCCAAAUGAAAACUUUAACCCGCCGGU
((((((.....(((((((((...))))))))).((((.......(((.((((......)))).))).......)))).............)))))) ( -23.74)
>DroAna_CAF1 134401 94 - 1
ACUGGCCCAAAGAUCGAUUGUGGCAAUCGAUUGCAUUGAUGAUUUAUGGUGCUAAAAUGUAUAAUAUACUCGAGUUGAAAACU-UAACCCGCCGG-
.(((((.(((.(((((((((...)))))))))...)))..((..(((.((((......)))).)))...))(.(((((....)-)))).))))))- ( -21.50)
>consensus
ACUGGCCAAAAGAUCGAUUGUGGCAAUCGAUUGCAUUGAUGAUUUAUAGUGCUAAAAUGCAUAAUAUGCUCCAAAUGAAAACUUUAACCCGCCGGU
((((((.....(((((((((...))))))))).((((.......(((.((((......)))).))).......)))).............)))))) (-21.94 = -22.11 +   0.17)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:07 2006