Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,911,583 – 8,911,689 |
Length | 106 |
Max. P | 0.946120 |
Location | 8,911,583 – 8,911,689 |
---|---|
Length | 106 |
Sequences | 6 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 74.89 |
Mean single sequence MFE | -27.64 |
Consensus MFE | -14.21 |
Energy contribution | -14.24 |
Covariance contribution | 0.03 |
Combinations/Pair | 1.07 |
Mean z-score | -2.17 |
Structure conservation index | 0.51 |
SVM decision value | 1.36 |
SVM RNA-class probability | 0.946120 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8911583 106 - 22407834 UUUCCGCUACCUGCACCACAGGCACAGC-AUAUAAGUUAGUGCGUAUGCGUA--AUAUGC--AAACGAUGCGUAUGCGUAAUGUGCA-AUUUUAUAUCCAACUUGUGUAACA .....(((.((((.....))))...)))-(((((((((.(..(((.((((((--.(((((--(.....)))))))))))))))..).-((.....))..))))))))).... ( -28.30) >DroPse_CAF1 272753 91 - 1 UUUCCGCUAGCUGCACC--------------------CAUUGCGUAUGCUUUGCAUAUGCGUAUACGAUGCGUAUGCGUAAUGUGAA-AUUUUUGCACAAUCUUGCAUAAUC ...........((((..--------------------.((((.(((...((..(((.((((((((((...)))))))))))))..))-.....))).))))..))))..... ( -23.90) >DroSec_CAF1 121815 101 - 1 UUUCCGCUACCUGCACCACAGGC------ACAUAAGUCAGUGCGUAUGCGUA--AUAUGC--AAACGAUGCGUAUGCGUAAUGUGGA-AUUUUAUAUCCAACUUGUGUAACA .........((((.....)))).------((((((((((.((((((((((((--......--......)))))))))))).))((((-........)))))))))))).... ( -29.20) >DroYak_CAF1 125766 106 - 1 UUUCCGCUACCUGCACAACGGGCACCAC-ACAUAAGUCAGUGCGUAUGCGUA--AUAUGC--AAACGAUGCGUAUGCGUAAUGUGCA-AUUUUAUAUCCAACUUGUGCAACA ...........(((((((.((((((.((-......))..))))(((((((((--.(((((--(.....)))))))))))...)))).-.........))...)))))))... ( -27.30) >DroAna_CAF1 124453 102 - 1 UUUCCGCUACCUGCACUUCGCUCGCUGGCGA-----ACAGUGCGUAUGCGUA--AUAUGC--AUACGCUGCGUAUGCGUAAUGUGCA-AUUUUAUCACCAUCUUGCGCAAUC ....((((((..((((((((((....)))))-----..)))))))).)))..--.(((((--(((((...)))))))))).((((((-(.............)))))))... ( -34.42) >DroPer_CAF1 175184 92 - 1 UUUCCGCUAGCUGCACC--------------------CAUUGCGUAUGCGUUGCAUAUGCGUAUACGAUGCGUAUGCGUAAUGUGAAAAUUUUUGCCCAAUCUUGCAUAAUC ((((.((.....))...--------------------(((((((((((((((((....)))........)))))))))))))).)))).....(((........)))..... ( -22.70) >consensus UUUCCGCUACCUGCACCAC_GGC______A______UCAGUGCGUAUGCGUA__AUAUGC__AAACGAUGCGUAUGCGUAAUGUGCA_AUUUUAUAUCCAACUUGCGUAACA .....((.....)).......................((.(((((((((((..................))))))))))).))............................. (-14.21 = -14.24 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:02 2006