Locus 3130

Sequence ID 2L_DroMel_CAF1
Location 8,909,624 – 8,909,715
Length 91
Max. P 0.641794
window4974

overview

Window 4

Location 8,909,624 – 8,909,715
Length 91
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 78.68
Mean single sequence MFE -29.88
Consensus MFE -15.98
Energy contribution -16.23
Covariance contribution 0.25
Combinations/Pair 1.15
Mean z-score -1.90
Structure conservation index 0.53
SVM decision value 0.22
SVM RNA-class probability 0.641794
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8909624 91 + 22407834
AAGUGAACUGAAAUCGGGAGAAAUGUCAGAGAUUUCUCAC--AGCAGC----------------------GAUAGCAAAUGGUAUCUGGUAG---CAGCCGCCAGCUGU--UGGGUGAAA
.......(((....)))(((((((.......))))))).(--((((((----------------------((((.(....).))))((((..---.....)))))))))--))....... ( -26.20)
>DroPse_CAF1 270644 117 + 1
AAGUGAACCGAAAUCAAAAGAAAUGUCAGAGAUUUCUCACACAGCAGC---UCUCCGCAAUCUCAAUCGUCGCAGCAAUUGGUGGCAGGCAGCGGCAGCUGCCAGCUGUUUUGGGUGAAA
......(((((((((...............))))))...((.((((((---(................(((((........))))).((((((....))))))))))))).))))).... ( -35.66)
>DroSec_CAF1 119862 91 + 1
AAGUGAACUGAAAUCGGGAGAAAUGUCAGAGAUUUCUCAC--AGCAGC----------------------GGUAGUAAAUGGUAUCUGGUAG---CAGCCGCCAGCUGU--UGGGUGAAA
.((....))((((((..((......))...))))))((((--..((((----------------------(((......((((..(((....---)))..)))))))))--)).)))).. ( -24.50)
>DroYak_CAF1 123763 91 + 1
AAGUGAACUGAAAUCGGGAGAAAUGUCAGAGAUUUCUCAC--AGCAGC----------------------GGUAGCAAAUGGUAUCUGGUAG---CAGCCGCCAGCUGU--UGGGUGAAA
.......(((....)))(((((((.......))))))).(--((((((----------------------((..((...((.(((...))).---))))..)).)))))--))....... ( -25.80)
>DroAna_CAF1 122689 97 + 1
AAGUGAACUGAAAUCAAAAGAAAUGUCAGAGAUUUCUCAC--AGCAGCAGCUA----------------CGGCAGCAAAUUGUAUCUGGUAG---CAGCUGCCAGCUGU--UGGGUGAAA
.((....))((((((...............))))))((((--..((((((((.----------------.((((((....(((........)---))))))))))))))--)).)))).. ( -31.46)
>DroPer_CAF1 173097 117 + 1
AAGUGAACCGAAAUCAAAAGAAAUGUCAGAGAUUUCUCACACAGCAGC---UCUCCGCAAUCUCAAUCGUCGCAGCAAUUGGUGGCAGGCAGCGGCAGCUGCCAGCUGUUUUGGGUGAAA
......(((((((((...............))))))...((.((((((---(................(((((........))))).((((((....))))))))))))).))))).... ( -35.66)
>consensus
AAGUGAACUGAAAUCAAAAGAAAUGUCAGAGAUUUCUCAC__AGCAGC______________________GGCAGCAAAUGGUAUCUGGUAG___CAGCCGCCAGCUGU__UGGGUGAAA
.........((((((....((....))...))))))((((...(((((......................((((.(....).)))).(((.(......).))).))))).....)))).. (-15.98 = -16.23 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:01 2006