Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 900,068 – 900,188 |
Length | 120 |
Max. P | 0.500000 |
Location | 900,068 – 900,188 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.67 |
Mean single sequence MFE | -39.38 |
Consensus MFE | -38.30 |
Energy contribution | -38.70 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.08 |
Structure conservation index | 0.97 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 900068 120 + 22407834 AAACCCGAGGCCAUCGAGUUCAUUGGCAACAUGCUGCAGGGCAACGUGGACGCCAUGGACAAGAUGUUCUACCAGUUCUGGUACAUGCUCGCCCACAUGUACUUCGCUGACGCCGACUAU ........(((((((..((((((.(((..((((.(((...))).))))...)))))))))..))))......((((...((((((((........))))))))..))))..)))...... ( -40.60) >DroSec_CAF1 28221 120 + 1 AAGCCCGAGGCCAUCGAUUUCAUCGGCAACAUGCUGCAGGGCAACGUGGACGCCAUGGACAAGAUGUUCUACCAGUUCUGGUACAUGCUCGCCCACAUGUACUUCGCUGACGCCGACUAC ........(((((((...(((((.(((..((((.(((...))).))))...))))))))...))))......((((...((((((((........))))))))..))))..)))...... ( -37.10) >DroSim_CAF1 24565 120 + 1 AAGCCCGAGGCCAUCGAGUUCAUCGGCAACAUGCUGCAGGGCAACGUGGACGCCAUGGACAAGAUGUUCUACCAGUUCUGGUACAUGCUCGCCCACAUGUACUUCGCUGACGCCGACUAC ........(((((((..((((((.(((..((((.(((...))).))))...)))))))))..))))......((((...((((((((........))))))))..))))..)))...... ( -40.60) >DroEre_CAF1 31738 120 + 1 AAGCCCGAGGCCAUCGAGUUCAUCGGCAACAUGCUGCAGGGCAACGUGGACGCCAUGGACAAGAUGUUCUACCAGUUCUGGUACAUGCUCGCCCACAUGUACUUCGCUGACGCCGACUAC ........(((((((..((((((.(((..((((.(((...))).))))...)))))))))..))))......((((...((((((((........))))))))..))))..)))...... ( -40.60) >DroYak_CAF1 28645 120 + 1 AAACCCGAGGCCAUCGAGUUCAUUGGCAACAUGCUGCAGGGCAACGUGGAUGCCAUGGACAAGAUGUUCUACCAGUUCUGGUACAUGCUCGCCCACAUGUACUUCGCCGACGCCGACUAC ........(((((((..((((((.((((.((((.(((...))).))))..))))))))))..))))........(((..((((((((........)))))))).....))))))...... ( -38.00) >consensus AAGCCCGAGGCCAUCGAGUUCAUCGGCAACAUGCUGCAGGGCAACGUGGACGCCAUGGACAAGAUGUUCUACCAGUUCUGGUACAUGCUCGCCCACAUGUACUUCGCUGACGCCGACUAC ........(((((((..((((((.(((..((((.(((...))).))))...)))))))))..))))......((((...((((((((........))))))))..))))..)))...... (-38.30 = -38.70 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:45 2006