Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,897,085 – 8,897,201 |
Length | 116 |
Max. P | 0.705521 |
Location | 8,897,085 – 8,897,201 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 75.77 |
Mean single sequence MFE | -24.06 |
Consensus MFE | -4.78 |
Energy contribution | -6.66 |
Covariance contribution | 1.88 |
Combinations/Pair | 1.40 |
Mean z-score | -1.70 |
Structure conservation index | 0.20 |
SVM decision value | 0.36 |
SVM RNA-class probability | 0.705521 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8897085 116 - 22407834 GGGCUUAAGCAUAUUUAUUCACCUGGUCACAAAGGGAAUA----AAAUUGCUUGAGUAAUUAUUUUUAAUUUCCUACUAAUAAACCAUUUAUUCGUGAACACAAGUUCAAAUGCCAAUGA (((((((((((..(((((((.(((........))))))))----))..)))))))))(((((....))))).))...........((((......(((((....)))))......)))). ( -28.30) >DroSec_CAF1 107253 116 - 1 UGGCUGAAGCAUAUUAUUAAACCUGGUCACAAAGGGAAUC----AAAUUGGUUGAGUAAUUAUGUUUAAUUUCUUACAAAUAAGCCAUUUAUUCAUGAAUACAAGUUCAAAAGCCAAUGA (((((.((((((((((((.((((((((..(....)..)))----)....)))).))))).)))))))............................(((((....)))))..))))).... ( -21.70) >DroSim_CAF1 105884 116 - 1 GGGCUUAGGCAUUUUAUUAAACCUAGUCACAAAGGGAAUA----AAAUUACUUGAGUAAUUCUAUUUAAUUUUCGACUAAUAAACCAUUUAUUCGUGAACAUAAGUUCAAAAGCCAAUGC .(((((.................(((((..(((..(((((----.((((((....)))))).)))))..)))..)))))................(((((....))))).)))))..... ( -24.00) >DroEre_CAF1 111672 120 - 1 UGGCCAAGGCAUAUUAUUAAAACUUGACGAAGUCGGAAAAAAUGGGAUUGGUUGAGUAGUUAGGUUUUAUUUCCUACUAAUAAACUGUUUAUUUGCUAAUACAAGUUCAAAUGGCAAUGA ..(((((((((..((((((..(((..((..((((...........)))).))..)))...((((........)))).))))))..)))))(((((......))))).....))))..... ( -21.90) >DroYak_CAF1 110795 110 - 1 UGGCCAAGGCUUAUUAUUAAAGCUGGCCAAAGUGGAAAAA----------UUUGAGUCUUUAUGUUUUAUUUCCUACUUAUAAAGCGUUUAUUUGAUAAUACAAGUUCAAAUGCCAAUGA ((((((..((((.......))))))))))...(((....(----------(((((......(((((((((.........)))))))))..(((((......))))))))))).))).... ( -24.40) >consensus UGGCUAAGGCAUAUUAUUAAACCUGGUCACAAAGGGAAUA____AAAUUGCUUGAGUAAUUAUGUUUAAUUUCCUACUAAUAAACCAUUUAUUCGUGAAUACAAGUUCAAAUGCCAAUGA .(((.............................((((((......((((((....)))))).......)))))).....................(((((....)))))...)))..... ( -4.78 = -6.66 + 1.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:56 2006