Locus 3123

Sequence ID 2L_DroMel_CAF1
Location 8,882,613 – 8,882,714
Length 101
Max. P 0.522810
window4964

overview

Window 4

Location 8,882,613 – 8,882,714
Length 101
Sequences 4
Columns 101
Reading direction reverse
Mean pairwise identity 96.46
Mean single sequence MFE -15.50
Consensus MFE -14.93
Energy contribution -15.18
Covariance contribution 0.25
Combinations/Pair 1.00
Mean z-score -1.43
Structure conservation index 0.96
SVM decision value -0.02
SVM RNA-class probability 0.522810
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8882613 101 - 22407834
UGAUGAUGAUGUUGAUGAUGAUUUGGUGAUUUUCUUUAUUAUUAUUACUGUUUUUAACCAACUUCUUAUUACAGCGGGUUUUUGGUUAUUUUGUUUUUUUC
(((((((((((..((.(((.((...)).))).))..))))))))))).......(((((((...((..(....)..))...)))))))............. ( -16.20)
>DroSec_CAF1 92672 97 - 1
UGAUGAUGAUGUUGAUGAUGAUUUGGUGAUUUUCUUUAUUAUUAUUACUGUUUUUAACCAACUUCUUAUUACAGCGGGUUUUUGGUUAUUU----UUUUUC
(((((((((((..((.(((.((...)).))).))..))))))))))).......(((((((...((..(....)..))...)))))))...----...... ( -16.20)
>DroSim_CAF1 91396 97 - 1
UGAUGAUGAUGUUGAUGAUGAUUUGGUGAUUUUCUUUAUUAUUAUUACUGUUUUUAACCAACUUCUUAUUACAGCGGGUUUUUGGUUAUUU----UUUUUC
(((((((((((..((.(((.((...)).))).))..))))))))))).......(((((((...((..(....)..))...)))))))...----...... ( -16.20)
>DroEre_CAF1 97207 95 - 1
UGAUGAUGAUGUUGAUGAUGAUUUGGUGAUUUUCUUUAUUAUUAUUACUGUUUUUAACCAACUUCUUAUUACAGCUGGUUUUUGGUU--UU----UUUUUC
(((((((((((..((.(((.((...)).))).))..)))))))))))........((((((...((..........))...))))))--..----...... ( -13.40)
>consensus
UGAUGAUGAUGUUGAUGAUGAUUUGGUGAUUUUCUUUAUUAUUAUUACUGUUUUUAACCAACUUCUUAUUACAGCGGGUUUUUGGUUAUUU____UUUUUC
(((((((((((..((.(((.((...)).))).))..))))))))))).......(((((((...((..(....)..))...)))))))............. (-14.93 = -15.18 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:51 2006