Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,876,450 – 8,876,541 |
Length | 91 |
Max. P | 0.622897 |
Location | 8,876,450 – 8,876,541 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 96.42 |
Mean single sequence MFE | -24.22 |
Consensus MFE | -20.04 |
Energy contribution | -19.98 |
Covariance contribution | -0.05 |
Combinations/Pair | 1.12 |
Mean z-score | -1.96 |
Structure conservation index | 0.83 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.622897 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8876450 91 + 22407834 GCCCUGCC-GACCAUUUAUGCCAAAUCAUUUGGCCAAAAUAAAUUAAAUAUGAUUUUGGUUUGUCAGCCGGACGAAAGCUGAUUUAUAGGGC (((((((.-(((.......(((((.....)))))......((((((((......))))))))))).))(((.(....))))......))))) ( -24.40) >DroSec_CAF1 86583 91 + 1 GCACUGCC-GACCAUUUAUGCCAAAUCAUUUGGCCAAAAUAAAUUAAAUAUGAUUUUGGUUUGUCAGCCGGACGAAAGCUGAUUUAUAGGGC .....(((-(((((.....(((((.....)))))......((((((....))))))))))).((((((.........))))))......))) ( -19.00) >DroSim_CAF1 85029 91 + 1 GCCCUGCC-GACCAUUUAUGCCAAAUCAUUUGGCCAAAAUAAAUUAAAUAUGAUUUUGGUUUGUCAGCCGGACGAAAGCUGAUUUAUAGGGC (((((((.-(((.......(((((.....)))))......((((((((......))))))))))).))(((.(....))))......))))) ( -24.40) >DroEre_CAF1 90919 91 + 1 GCCCUGCC-GACCAUUUAUGCCAAAUCAUUUGGCCAAAAUAAAUUAAAUAUGAUUUUGGUUUGUCAGCCGGACGAAAGCUGAUUUAUAGGGC (((((((.-(((.......(((((.....)))))......((((((((......))))))))))).))(((.(....))))......))))) ( -24.40) >DroYak_CAF1 89383 91 + 1 GCCCUGCC-GACCAUUUAUGCCAAAUCAUUUGGCCAAAAUAAAUUAAAUAUGAUUUUGGUUUGUCAGCCGGACGAAAGCUGAUUUAUAGGGC (((((((.-(((.......(((((.....)))))......((((((((......))))))))))).))(((.(....))))......))))) ( -24.40) >DroAna_CAF1 89027 92 + 1 UCUCUGCCCCACGAAUUGUGCCAAAUCAUUUGGCCAAAAUAAAUUAAAUAUGAUUUCGGUUUGUCAGCCGGACGAAAGCUGAUUUAUGGGGC .....(((((.....(((.(((((.....)))))))).((((((((........((((((......))))))(....).))))))))))))) ( -28.70) >consensus GCCCUGCC_GACCAUUUAUGCCAAAUCAUUUGGCCAAAAUAAAUUAAAUAUGAUUUUGGUUUGUCAGCCGGACGAAAGCUGAUUUAUAGGGC (((((..............(((((.....)))))....((((((((........((((((......))))))(....).))))))))))))) (-20.04 = -19.98 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:48 2006