Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 899,274 – 899,468 |
Length | 194 |
Max. P | 0.987381 |
Location | 899,274 – 899,394 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.00 |
Mean single sequence MFE | -36.72 |
Consensus MFE | -35.10 |
Energy contribution | -34.98 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.10 |
Mean z-score | -1.18 |
Structure conservation index | 0.96 |
SVM decision value | 0.34 |
SVM RNA-class probability | 0.693904 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 899274 120 + 22407834 CGAUCUACGAGAUCUUCCCACAGUUCUUCUUCAACAGCAAGUUUGUGUUCGAAGCGGAGAAGUUCGACUACGAGAUGUGGAUGAAGAUGACGAUGUACGAGAAGGAGUACAUGGAUGUGU .((((.....))))....((((..((.((((((.(.(((..((((((.(((((.(......)))))).)))))).))).).)))))).))(.((((((........)))))).).)))). ( -33.70) >DroSec_CAF1 27427 120 + 1 CGAUCUACGAGAUCUUCCCGCAGUUCUUCUUCAACAGCAAGUUUGUGUUCGAGGCGGAGAAGUUCGACUACGAGAUGUGGAUGAAGAUGACCAUGUACGAGAAGGAGUACAUGGAUGUGU .((((.....))))....((((..((.((((((.(.(((..((((((.(((((.(......)))))).)))))).))).).)))))).))((((((((........)))))))).)))). ( -37.70) >DroSim_CAF1 23771 120 + 1 CGAUCUACGAGAUCUUCCCGCAGUUCUUCUUCAACAGCAAGUUUGUGUUCGAGGCGGAGAAGUUCGACUACGAGAUGUGGAUGAAGAUGACCAUGUACGAGAAGGAGUACAUGGAUGUGU .((((.....))))....((((..((.((((((.(.(((..((((((.(((((.(......)))))).)))))).))).).)))))).))((((((((........)))))))).)))). ( -37.70) >DroEre_CAF1 30938 120 + 1 CGAUCUACGAGAUCUUCCCGCAGUUCUUCUUCAACAGCAAGUUCGUGUACGAGGCGGAGAAGUUCGACUACGAGAUGUGGAUGAAGGUGACCAUGUACGAGAAGGAGUACAUGGACGUGU .....((((..(((((((((((...(((((((....((....(((....))).)))))))))((((....)))).)))))..))))))..((((((((........)))))))).)))). ( -37.10) >DroYak_CAF1 27845 120 + 1 CGAUCUACGAGAUCUUCCCGCAGUUCUUCUUCAACAGCAAGUUCGUGUUCGAGGCGGAGAAGUUCGACUACGAGAUGUGGAUGAAGAUGAGCAUGUACGAGAAGGAGUACAUGGACGUGU .((((.....))))....(((.((((.((((((.(.(((..((((((.(((((.(......)))))).)))))).))).).)))))).))))((((((........))))))....))). ( -37.40) >consensus CGAUCUACGAGAUCUUCCCGCAGUUCUUCUUCAACAGCAAGUUUGUGUUCGAGGCGGAGAAGUUCGACUACGAGAUGUGGAUGAAGAUGACCAUGUACGAGAAGGAGUACAUGGAUGUGU .((((.....))))....(((...((.((((((.(.(((..((((((.(((((.(......)))))).)))))).))).).)))))).))((((((((........))))))))..))). (-35.10 = -34.98 + -0.12)
Location | 899,274 – 899,394 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 97.00 |
Mean single sequence MFE | -31.88 |
Consensus MFE | -27.84 |
Energy contribution | -28.28 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.03 |
Mean z-score | -2.10 |
Structure conservation index | 0.87 |
SVM decision value | 2.08 |
SVM RNA-class probability | 0.987381 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 899274 120 - 22407834 ACACAUCCAUGUACUCCUUCUCGUACAUCGUCAUCUUCAUCCACAUCUCGUAGUCGAACUUCUCCGCUUCGAACACAAACUUGCUGUUGAAGAAGAACUGUGGGAAGAUCUCGUAGAUCG ........((((((........))))))((..((((((..(((((..(((....)))..((((...((((.((((((....)).)))))))).)))).)))))))))))..))....... ( -26.40) >DroSec_CAF1 27427 120 - 1 ACACAUCCAUGUACUCCUUCUCGUACAUGGUCAUCUUCAUCCACAUCUCGUAGUCGAACUUCUCCGCCUCGAACACAAACUUGCUGUUGAAGAAGAACUGCGGGAAGAUCUCGUAGAUCG ......((((((((........))))))))...((((((........(((..((.((.....)).))..)))(((((....)).))))))))).((.(((((((.....))))))).)). ( -31.80) >DroSim_CAF1 23771 120 - 1 ACACAUCCAUGUACUCCUUCUCGUACAUGGUCAUCUUCAUCCACAUCUCGUAGUCGAACUUCUCCGCCUCGAACACAAACUUGCUGUUGAAGAAGAACUGCGGGAAGAUCUCGUAGAUCG ......((((((((........))))))))...((((((........(((..((.((.....)).))..)))(((((....)).))))))))).((.(((((((.....))))))).)). ( -31.80) >DroEre_CAF1 30938 120 - 1 ACACGUCCAUGUACUCCUUCUCGUACAUGGUCACCUUCAUCCACAUCUCGUAGUCGAACUUCUCCGCCUCGUACACGAACUUGCUGUUGAAGAAGAACUGCGGGAAGAUCUCGUAGAUCG ....(.((((((((........)))))))).).............((((((((((...((((..(((.(((....)))....)).)..))))..).))))))))).((((.....)))). ( -35.30) >DroYak_CAF1 27845 120 - 1 ACACGUCCAUGUACUCCUUCUCGUACAUGCUCAUCUUCAUCCACAUCUCGUAGUCGAACUUCUCCGCCUCGAACACGAACUUGCUGUUGAAGAAGAACUGCGGGAAGAUCUCGUAGAUCG ....(..(((((((........)))))))..).((((((..((((..((((..((((...........))))..))))...)).)).)))))).((.(((((((.....))))))).)). ( -34.10) >consensus ACACAUCCAUGUACUCCUUCUCGUACAUGGUCAUCUUCAUCCACAUCUCGUAGUCGAACUUCUCCGCCUCGAACACAAACUUGCUGUUGAAGAAGAACUGCGGGAAGAUCUCGUAGAUCG ......((((((((........))))))))...............(((((((((....((((((.((..(((........)))..)).).))))).))))))))).((((.....)))). (-27.84 = -28.28 + 0.44)
Location | 899,354 – 899,468 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.37 |
Mean single sequence MFE | -31.68 |
Consensus MFE | -27.88 |
Energy contribution | -28.76 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.06 |
Mean z-score | -1.71 |
Structure conservation index | 0.88 |
SVM decision value | 1.57 |
SVM RNA-class probability | 0.964719 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 899354 114 + 22407834 AUGAAGAUGACGAUGUACGAGAAGGAGUACAUGGAUGUGUACUACAAGACC------AACGGAUACGACUACUCAACCAUGUACCGGUCCAGCGACUACACCUACAUGAAGGACUUCAAG .(((((.......((((...(..(((((((((((.((.((((.....)...------..((....))..))).)).))))))))...)))..)...))))(((......))).))))).. ( -26.20) >DroSec_CAF1 27507 114 + 1 AUGAAGAUGACCAUGUACGAGAAGGAGUACAUGGAUGUGUACUACAAGACC------CACGGAAACGACUACACAACCAUGUACCGGUCCAGCGACUACACCUACAUGAAGGACUUCAAG .(((((.....((((((.(.....(.((((((((.(((((((.....)...------..((....))..)))))).)))))))))((((....))))...).)))))).....))))).. ( -34.10) >DroSim_CAF1 23851 114 + 1 AUGAAGAUGACCAUGUACGAGAAGGAGUACAUGGAUGUGUACUACAAGACC------CACGGAAACGACUACACAACCAUGUACCGGUCCAGCGACUACACCUACAUGAAGGACUUCAAG .(((((.....((((((.(.....(.((((((((.(((((((.....)...------..((....))..)))))).)))))))))((((....))))...).)))))).....))))).. ( -34.10) >DroEre_CAF1 31018 120 + 1 AUGAAGGUGACCAUGUACGAGAAGGAGUACAUGGACGUGUACUACAAGAGCAACUCGCACGGAUACGACUACGCCACCAUGUACCAGUCCAGCGACUACACCUACAUGAAGGACUUCAAG .((((((((.((((((((........)))))))).(((((.((....(((...)))....)))))))..))).((..((((((..((((....)))).....))))))..)).))))).. ( -33.90) >DroYak_CAF1 27925 120 + 1 AUGAAGAUGAGCAUGUACGAGAAGGAGUACAUGGACGUGUACUACAAGGGCCACUCCUACGGAUACGACUACCCAAGCAUGUACCAGUCCAGCGACUACACCUACAUGAAGGACUUCAAG .(((((.....(((((((........)))))))..(((((.((...((((....))))..))))))).....((...((((((..((((....)))).....))))))..)).))))).. ( -30.10) >consensus AUGAAGAUGACCAUGUACGAGAAGGAGUACAUGGAUGUGUACUACAAGACC______CACGGAUACGACUACACAACCAUGUACCGGUCCAGCGACUACACCUACAUGAAGGACUUCAAG .(((((.....((((((.(.....(.((((((((.(((((((.....)...........((....))..)))))).)))))))))((((....))))...).)))))).....))))).. (-27.88 = -28.76 + 0.88)
Location | 899,354 – 899,468 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.37 |
Mean single sequence MFE | -37.06 |
Consensus MFE | -29.02 |
Energy contribution | -29.86 |
Covariance contribution | 0.84 |
Combinations/Pair | 1.05 |
Mean z-score | -1.98 |
Structure conservation index | 0.78 |
SVM decision value | 0.98 |
SVM RNA-class probability | 0.893390 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 899354 114 - 22407834 CUUGAAGUCCUUCAUGUAGGUGUAGUCGCUGGACCGGUACAUGGUUGAGUAGUCGUAUCCGUU------GGUCUUGUAGUACACAUCCAUGUACUCCUUCUCGUACAUCGUCAUCUUCAU ..(((((......((((((((.(((...))).)))(((((((((.((.(((.(((...((...------))...)).).))).)).)))))))))........)))))......))))). ( -30.10) >DroSec_CAF1 27507 114 - 1 CUUGAAGUCCUUCAUGUAGGUGUAGUCGCUGGACCGGUACAUGGUUGUGUAGUCGUUUCCGUG------GGUCUUGUAGUACACAUCCAUGUACUCCUUCUCGUACAUGGUCAUCUUCAU ..(((((....((((((((((.(((...))).)))(((((((((.((((((.(((..((....------))...)).).)))))).)))))))))........)))))))....))))). ( -39.70) >DroSim_CAF1 23851 114 - 1 CUUGAAGUCCUUCAUGUAGGUGUAGUCGCUGGACCGGUACAUGGUUGUGUAGUCGUUUCCGUG------GGUCUUGUAGUACACAUCCAUGUACUCCUUCUCGUACAUGGUCAUCUUCAU ..(((((....((((((((((.(((...))).)))(((((((((.((((((.(((..((....------))...)).).)))))).)))))))))........)))))))....))))). ( -39.70) >DroEre_CAF1 31018 120 - 1 CUUGAAGUCCUUCAUGUAGGUGUAGUCGCUGGACUGGUACAUGGUGGCGUAGUCGUAUCCGUGCGAGUUGCUCUUGUAGUACACGUCCAUGUACUCCUUCUCGUACAUGGUCACCUUCAU ..((((....))))((.((((((((((....)))))(((((..(.((((.(.(((((....))))).))))).)..).))))....((((((((........)))))))).))))).)). ( -37.70) >DroYak_CAF1 27925 120 - 1 CUUGAAGUCCUUCAUGUAGGUGUAGUCGCUGGACUGGUACAUGCUUGGGUAGUCGUAUCCGUAGGAGUGGCCCUUGUAGUACACGUCCAUGUACUCCUUCUCGUACAUGCUCAUCUUCAU ..(((((.....((((((.(.(.(((.(((((((..((((.(((..(((((.((.((....)).)).).))))..)))))))..))))).)))))....).).)))))).....))))). ( -38.10) >consensus CUUGAAGUCCUUCAUGUAGGUGUAGUCGCUGGACCGGUACAUGGUUGUGUAGUCGUAUCCGUG______GGUCUUGUAGUACACAUCCAUGUACUCCUUCUCGUACAUGGUCAUCUUCAU ..(((((....((((((((((.(((...))).)))(((((((((.((.(((.(((...((.........))...)).).))).)).)))))))))........)))))))....))))). (-29.02 = -29.86 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:44 2006