Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,871,975 – 8,872,068 |
Length | 93 |
Max. P | 0.951815 |
Location | 8,871,975 – 8,872,068 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 77.36 |
Mean single sequence MFE | -26.10 |
Consensus MFE | -17.09 |
Energy contribution | -19.38 |
Covariance contribution | 2.29 |
Combinations/Pair | 1.11 |
Mean z-score | -2.04 |
Structure conservation index | 0.65 |
SVM decision value | 1.42 |
SVM RNA-class probability | 0.951815 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8871975 93 + 22407834 AUCAGAUGUCGCAGAUGGAAUUACGCCAAAUGAGGCGAGUGCAGCACUUGAGGUGCACUCGGAUCUCAUUUGCAAGGCACUUUU-UUUAAACCC ...((.(((((((((((..(((..(((......)))(((((((.(......).))))))).)))..)))))))..))))))...-......... ( -32.00) >DroSec_CAF1 82170 93 + 1 AUCAGAUGUCGCAGAUGGAAUUACGCCAAAUGAGGCGAGUGCAGCACUUGAGGUGCACUCGGAUCUCAUUUGCAAGGCACUUUU-UUUAAACCC ...((.(((((((((((..(((..(((......)))(((((((.(......).))))))).)))..)))))))..))))))...-......... ( -32.00) >DroSim_CAF1 80635 93 + 1 AUCAGAUGUCGCAGAUGGAAUUACGCCAAAUGAGGCGAGUGCAGCACUUGAGGUGCACUCGGAUCUCAUUUGCAAGGCACUUUU-UUUAAACCC ...((.(((((((((((..(((..(((......)))(((((((.(......).))))))).)))..)))))))..))))))...-......... ( -32.00) >DroEre_CAF1 86596 79 + 1 CUCAGAUGUCGCAGAUGGAAUUACGCCAAAUGAGGCGAGUGCAGCACUUGAGGUGCACUU----UUUAU---------ACUUU--UUUUAACCC .......(((.((..(((.......)))..)).)))(((((((.(......).)))))))----.....---------.....--......... ( -17.40) >DroYak_CAF1 84799 94 + 1 CUCAGAUGUCGCAGAUGGAAUUACGCCAAAUGAGGCGAGUGCAGCACUUGAGGUGCACUCGGAUCUCAUUUGCAAGGCACUUUUUUUUAAACCC ...((.(((((((((((..(((..(((......)))(((((((.(......).))))))).)))..)))))))..))))))............. ( -32.00) >DroAna_CAF1 84618 76 + 1 ------CUUGGUAUAUGGAAUUACAACGCACCAGGA------ACAACCUAA----CUCUUUGAUUUCAUUUUCAAGACACUCGG-ACUCAACC- ------(((((...(((((((((.........(((.------....)))..----.....)))))))))..)))))........-........- ( -11.19) >consensus AUCAGAUGUCGCAGAUGGAAUUACGCCAAAUGAGGCGAGUGCAGCACUUGAGGUGCACUCGGAUCUCAUUUGCAAGGCACUUUU_UUUAAACCC ..........((((((((......(((......)))(((((((.(......).))))))).....))))))))..................... (-17.09 = -19.38 + 2.29)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:46 2006