Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,864,421 – 8,864,541 |
Length | 120 |
Max. P | 0.522788 |
Location | 8,864,421 – 8,864,541 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 78.89 |
Mean single sequence MFE | -38.35 |
Consensus MFE | -22.78 |
Energy contribution | -22.63 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.47 |
Mean z-score | -1.50 |
Structure conservation index | 0.59 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.522788 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8864421 120 + 22407834 AUUCAGGCGCAGUUCAACCAUGGCCGUCUGAACGUCGUGGAAGUGGUUCCCGAAGAGCACCUCAUGGUCUGCACCCUGACUUUAUACUUGCAUUCAAUGAUGUUCUUCUUCUGCGUGUGC ...((.((((((...((((((..(((.(........))))..))))))...((((((((..((((.(..((((...............))))..).))))))))))))..)))))).)). ( -36.16) >DroSim_CAF1 73162 120 + 1 AUUCAGGCGCAGUUCAACCACGGCCGGCUGGACGUCGUGGAAGUGGUUCCCGAAGAGCACCUCAUGGUCUGCACCCUGACCUUAUACUUGCACUCAAUGAUGUUCUUCUUCUGCGUGUGC ...((.((((((...((((((..(((((.....)))..))..))))))...((((((((..((((.(..((((...............))))..).))))))))))))..)))))).)). ( -38.26) >DroEre_CAF1 78925 120 + 1 AUCCAGGCGCAGUUCAACCACGGUCGCCUGAACAUCGUGGAGGUGGUUCCCGAGGAGCACCUCAUGGUCUGCACCCUGACCUUGUACCUGCACUCCAUGAUGUUCUUCUGCUGCGUAUGC ...((.(((((((...((....)).....((((((((((((((((((....((((....))))..((((........))))....))).)).)))))))))))))....))))))).)). ( -46.80) >DroWil_CAF1 124515 120 + 1 AUUCAGGCGCAAUUCAAUCAUGGGCGGAUGAUCAUUGUCGAGGUAGUUCCAAAGAAUCAUUUGAUUAUCUGCAUUCUUACGCUGUACUUGCAUUCCGUCAUGUUCUUUUGUUGUCUGUGC ...(((((((((......((((((((((((((((...((..((.....))...))......)))))))))))........((.......))......))))).....))).))))))... ( -30.70) >DroYak_CAF1 76871 120 + 1 AUCCAGGCGCAGCUCAACCACUGCCGCCUGGACACCGUGGAGAUUGUUCCCAAGGAGCACCUCAUGGUCUGCACCCUGACCUUAUACCUGCACUCCAUGAUCUUCUUCUUCUGCGUGUGC .(((((((((((........))).))))))))(((((..(((..((((((...))))))..((((((..((((...............))))..))))))........)))..)).))). ( -45.56) >DroAna_CAF1 76341 120 + 1 AUCCAGGCGCAGUUUAACCAUGGCCGGCUGGAUGCCAUCGAAUUGGUGCCGCAGCAACACCUCGUUGUCUGCGCCCUGACCGUCUACCUGCACACCGUAAUGUUCUUCAGCUGCAUAUGC ...(((((((((..((((...((...(((((..((((......))))..).))))....))..)))).))))).))))...........(((....(((.((.....))..)))...))) ( -32.60) >consensus AUCCAGGCGCAGUUCAACCACGGCCGGCUGAACAUCGUGGAAGUGGUUCCCGAGGAGCACCUCAUGGUCUGCACCCUGACCUUAUACCUGCACUCCAUGAUGUUCUUCUGCUGCGUGUGC ...((.((((((.....(((((((.........)))))))...........((((((((..((((.(..((((...............))))..).))))))))))))..)))))).)). (-22.78 = -22.63 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:43 2006