Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,861,094 – 8,861,200 |
Length | 106 |
Max. P | 0.785373 |
Location | 8,861,094 – 8,861,200 |
---|---|
Length | 106 |
Sequences | 6 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 79.85 |
Mean single sequence MFE | -24.48 |
Consensus MFE | -18.90 |
Energy contribution | -18.90 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.44 |
Structure conservation index | 0.77 |
SVM decision value | 0.57 |
SVM RNA-class probability | 0.785373 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8861094 106 + 22407834 CC----CCCGUCGCCC----CACCAACUAAAUGACACAAAAAUAUGGGCUUAACCGGAAACGGAUGUAUUAUCUGCGCUAACUGCGCUGCCACACACAACAGUCAGUC----AGAGAC ..----..........----......((...((((.((......))(((....(((....)))...........((((.....)))).)))..............)))----).)).. ( -23.50) >DroVir_CAF1 16931 94 + 1 -------UCUGCUGCC----UACUCGCUAAAUGACACAAAAAUAUGGGCUUAACCGGAAACGGAUGUAUUAUCUGCGCUAACUGCGCUGCCACUGCC---------GC----UGCCAC -------...((.((.----................((......))(((....(((....)))...........((((.....)))).)))...)).---------))----...... ( -21.50) >DroPse_CAF1 92622 110 + 1 UC----CCUAUCCCCACAUACACACACUAAAUGACACAAAAAUAUGGGCUUAACCGGAAACGGAUGUAUUAUCUGCGCUAACUGCGCUGCCACACACAACAUUCAGUC----AGCCAG ..----.........................((((.((......))(((....(((....)))...........((((.....)))).)))..............)))----)..... ( -22.30) >DroEre_CAF1 75498 110 + 1 CCGCCGCCCUUCGCCC----CACCGACUGAAUGACACAAAAAUAUGGGCUUAACCGGAAACGGAUGUAUUAUCUGCGCUAACUGCGCUGCCACACACAACAGUCAGUC----AGAGGC ..(((.....(((...----...)))((((.((((.((......))(((....(((....)))...........((((.....)))).)))..........)))).))----)).))) ( -32.80) >DroAna_CAF1 73024 114 + 1 CCGCCACCCCCUCUCC----AGUAAACUAAAUGACACAAAAAUAUGGGCUUAACCGGAAACGGAUGUAUUAUCUGCGCUAACUGCGCUGCCACACACAACAGUCAGUCAGUCAGAGUC ..........((((..----.....(((...((((.((......))(((....(((....)))...........((((.....)))).)))..........))))...))).)))).. ( -24.50) >DroPer_CAF1 94454 110 + 1 UC----CCUAUCCCCACAUACAUACACUAAAUGACACAAAAAUAUGGGCUUAACCGGAAACGGAUGUAUUAUCUGCGCUAACUGCGCUGCCACACACAACAUUCAGUC----AGCCAG ..----.........................((((.((......))(((....(((....)))...........((((.....)))).)))..............)))----)..... ( -22.30) >consensus CC____CCCAUCCCCC____CACACACUAAAUGACACAAAAAUAUGGGCUUAACCGGAAACGGAUGUAUUAUCUGCGCUAACUGCGCUGCCACACACAACAGUCAGUC____AGACAC ..............................................(((....(((....)))...........((((.....)))).)))........................... (-18.90 = -18.90 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:40 2006