Locus 3114

Sequence ID 2L_DroMel_CAF1
Location 8,860,324 – 8,860,424
Length 100
Max. P 0.937364
window4951

overview

Window 1

Location 8,860,324 – 8,860,424
Length 100
Sequences 6
Columns 100
Reading direction reverse
Mean pairwise identity 91.33
Mean single sequence MFE -32.35
Consensus MFE -27.28
Energy contribution -27.15
Covariance contribution -0.13
Combinations/Pair 1.24
Mean z-score -2.45
Structure conservation index 0.84
SVM decision value 1.26
SVM RNA-class probability 0.937364
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8860324 100 - 22407834
GGAGCGGGAGAACAUAUGUGGGGGAUUGGUAAAUUUGCCGCAUUUGCUCCAAAACGGAAGCUCAAAUGGAGCUUGCACCUAGCAAAGUCGGGUAAUUAUG
(((((((........((((((.(((((....))))).))))))))))))).....(.((((((.....)))))).)(((..((...))..)))....... ( -33.70)
>DroSec_CAF1 70561 100 - 1
GGAGCGGGAGAACAUAUGUGUGGGAUUGGUAAAUUUGCCGCAUUUGCUCCAAAACGGAAGCUCAAAUGGAGCUUGCACCUAGCAAAGUCGGGUAAUUAUG
(((((((..........((((((((((....))))..))))))))))))).....(.((((((.....)))))).)(((..((...))..)))....... ( -29.00)
>DroSim_CAF1 69053 100 - 1
GGAGCGGGAGAACAUAUGUGGGGGAUUGGUAAAUUUGCCGCAUUUGCUCCAAAACGGAAGCUCAAAUGGAGCUUGCACCUAGCAAAGUCGGGUAAUUAUG
(((((((........((((((.(((((....))))).))))))))))))).....(.((((((.....)))))).)(((..((...))..)))....... ( -33.70)
>DroEre_CAF1 74759 100 - 1
GGAGCGGGAGCACAUAUGCGGGGGAUUGGUAAAUUUGCUGCAUUUGCUCCAAAGCGGAAGCUCAAAUGGAGCUUGCACCUAGCGAACUCGGGUAAUUAUG
...((.((((((...((((((.(((((....))))).)))))).))))))...))(.((((((.....)))))).)((((((....)).))))....... ( -38.00)
>DroYak_CAF1 72524 100 - 1
GGAGCGGGAGAGCAUAUGUGGGGGAUUGGUAAAUUUGCUGCAUUUGCUCCAAAACGGAAGCUCAAAUGGAGCUUGCACCUCGCAAAGUCGGGUAAUUAUG
...(((((.(((((.(((..(.(((((....))))).)..))).)))))......(.((((((.....)))))).)..)))))................. ( -35.50)
>DroAna_CAF1 72271 98 - 1
GGGGCAAGAGA--AUGGGCGGGAGAUUGGUAAAUUUACCGCAUUCGCUGCAGAACGGAAGCUCAAAUGGAGCUUGCAACUAGGAAAGUCAUGUAAUUAUG
..(((.((.((--((..((((.(((((....))))).)))))))).)).......(.((((((.....)))))).)..........)))........... ( -24.20)
>consensus
GGAGCGGGAGAACAUAUGUGGGGGAUUGGUAAAUUUGCCGCAUUUGCUCCAAAACGGAAGCUCAAAUGGAGCUUGCACCUAGCAAAGUCGGGUAAUUAUG
(((((((........((((((.(((((....))))).))))))))))))).....(.((((((.....)))))).)((((.........))))....... (-27.28 = -27.15 +  -0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:39 2006