Locus 3112

Sequence ID 2L_DroMel_CAF1
Location 8,850,448 – 8,850,544
Length 96
Max. P 0.723254
window4948

overview

Window 8

Location 8,850,448 – 8,850,544
Length 96
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 81.47
Mean single sequence MFE -27.27
Consensus MFE -17.53
Energy contribution -18.42
Covariance contribution 0.89
Combinations/Pair 1.14
Mean z-score -1.97
Structure conservation index 0.64
SVM decision value 0.41
SVM RNA-class probability 0.723254
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8850448 96 - 22407834
UGUAGUUUAU--UUUUUUACCACUU--GGUUCUGCGG-CAUAAGCUUGCGCAUCAUUGAUUUCAAUUUGAAGCUCGAGUUGUCGUCUUGGCAGGAC---CAGAA
..........--...........((--((((((((((-(...((((((.((.((((((....)))..))).)).))))))...)))...)))))))---))).. ( -28.60)
>DroSec_CAF1 60612 94 - 1
UGUAGUUU----UUUUUUACCACUU--GGUUCUGCGG-CAUAAGCUUGCGCAUCAUUGAUUUCAAUUUGAAGCUCGAGUUGUCGUCUUGGCAGGAC---CAGAA
.((((...----....))))...((--((((((((((-(...((((((.((.((((((....)))..))).)).))))))...)))...)))))))---))).. ( -28.70)
>DroSim_CAF1 59206 94 - 1
UGUAGUUU----UUUUUUACCACUU--GGUUCUGCGG-CAUAAGCUUGCGCAUCAUUGAUUUCAAUUUGAAGCUCGAGUUGUCGUCUUGGCAGGAC---CAGAA
.((((...----....))))...((--((((((((((-(...((((((.((.((((((....)))..))).)).))))))...)))...)))))))---))).. ( -28.70)
>DroEre_CAF1 63469 94 - 1
UGCAGUUU-------UUUUACACUU--GGUUCUGCGA-CAUAAGCUUGCGCAUCAUUGAUUUCGAUUUGAAGCUCGAGUUGUCGUCUUGGCAGGACUGGCAGAA
(((.((..-------....))....--((((((((((-(...((((((.((.((((((....)))..))).)).))))))...)))...)))))))).)))... ( -27.40)
>DroWil_CAF1 104314 80 - 1
---AGCUUCA--GG-GUUCAGGCUUCAGUCUCGGCGGCCAUAAGCUCGCGCAUCAUUGAUUUCAAUUUGAAGCUCGAGUUGUCG------------------AG
---(((((..--..-....))))).....(((((((.......(((((.((.((((((....)))..))).)).))))))))))------------------)) ( -21.01)
>DroYak_CAF1 62367 98 - 1
UGUAGUUAUUUUUUUUUGUGCACUU--GGUUCUGCGA-CAUAAGCUUGCGCAUCAUUGAUUUCAAUUUGAAGCUCGAGUUGUCGUCUUGGCAGGAC---CAGAA
.......................((--((((((((((-(...((((((.((.((((((....)))..))).)).))))))...)))...)))))))---))).. ( -29.20)
>consensus
UGUAGUUU____UUUUUUACCACUU__GGUUCUGCGG_CAUAAGCUUGCGCAUCAUUGAUUUCAAUUUGAAGCUCGAGUUGUCGUCUUGGCAGGAC___CAGAA
............................(((((((.(.....((((((.((.((((((....)))..))).)).)))))).......).)))))))........ (-17.53 = -18.42 +   0.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:36 2006