Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,845,473 – 8,845,575 |
Length | 102 |
Max. P | 0.988655 |
Location | 8,845,473 – 8,845,575 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 83.12 |
Mean single sequence MFE | -35.22 |
Consensus MFE | -25.47 |
Energy contribution | -26.27 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.09 |
Mean z-score | -2.87 |
Structure conservation index | 0.72 |
SVM decision value | 2.13 |
SVM RNA-class probability | 0.988655 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8845473 102 + 22407834 GUGCACCUUGGCAACGGGCAAUACGGUUCCCAUAAGUUAGCUAAAAAGCACUGAGAGGGCUCUAUGCUUAAGGGGGUGAAUGCCUGUGGG--UAGGUGCUAACC ..((((((..((.(((((((.(...(..(((.((((((((......(((.((....)))))))).))))).)))..).).)))))))..)--)))))))..... ( -37.10) >DroSec_CAF1 55607 93 + 1 GUGCACCUUGGCAACGGGCAAUACGGUCCCCAUAAGUUGGCUAAAAAGCG-----------CUAUGCUUAAGGGGGUGAAUGCCUGUGGGUGUAGGUACUAACC .(((((((.....(((((((......(((((.(((((((((........)-----------))).))))).)))))....))))))))))))))(((....))) ( -35.10) >DroSim_CAF1 54176 91 + 1 UUGCACCUUGGCAACGGGCAAUACGGUCCCCAUAAGUUGGCUAAAAAGCG-----------CUAUGCUUAAGGGGGUGAAUGCCUGUGGG--UAGGUGCUAACC ..((((((..((.(((((((......(((((.(((((((((........)-----------))).))))).)))))....)))))))..)--)))))))..... ( -37.60) >DroEre_CAF1 58341 89 + 1 GUGCACCUUGGCAACGGGCAAUAAGGUCCCCGUAAGUUGGCUAAAAAGCA-------------CUGCAAAGGGGGGUGAAUGCCUGUGGG--UAGGUGCUAACC ..((((((..((.(((((((....(.(((((....((..(((....))).-------------..))...))))).)...)))))))..)--)))))))..... ( -35.20) >DroYak_CAF1 57275 83 + 1 GUGCACCUUGGCAACGGGCAAUAAGGUUCCCAUAAGUUGGCU------CU-------------CGGCAAAAGGGGGUAAAUACUUGUGGG--UAGGUGCUAACC ..((((((((....))............(((((((((..(((------((-------------(.......))))))....)))))))))--.))))))..... ( -31.10) >consensus GUGCACCUUGGCAACGGGCAAUACGGUCCCCAUAAGUUGGCUAAAAAGCA___________CUAUGCUUAAGGGGGUGAAUGCCUGUGGG__UAGGUGCUAACC ..((((((.....(((((((......(((((.(((((............................))))).)))))....)))))))......))))))..... (-25.47 = -26.27 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:35 2006