Locus 3110

Sequence ID 2L_DroMel_CAF1
Location 8,843,166 – 8,843,258
Length 92
Max. P 0.998791
window4946

overview

Window 6

Location 8,843,166 – 8,843,258
Length 92
Sequences 5
Columns 92
Reading direction forward
Mean pairwise identity 71.18
Mean single sequence MFE -17.96
Consensus MFE -9.06
Energy contribution -9.78
Covariance contribution 0.72
Combinations/Pair 1.18
Mean z-score -2.65
Structure conservation index 0.50
SVM decision value 3.23
SVM RNA-class probability 0.998791
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8843166 92 + 22407834
AAGAGGUUUUAGUUCAAUAAGUGUAUAAGCGAAUAAUACGCUUGUUGGAUGAUUUGAUUACAGAUACGGUAAUUAUAAAGCAAAUCAUAAGU
..((.(((((((((((((((((((((.........)))))))))))))))....(((((((.......)))))))))))))...))...... ( -24.60)
>DroSec_CAF1 53331 71 + 1
AAUAGGUUUUAGUUCAAUAAGUGU------GAAUUAUACGCUUGUUGGAUGAUCUGAUUAGAGAUACGUUAA---------------UACGU
..((((((...(((((((((((((------(.....)))))))))))))))))))).........((((...---------------.)))) ( -19.30)
>DroSim_CAF1 51875 71 + 1
AAGAGGUUUUAGUUCAAUAAGUGU------GAAUUAUACGCUUGUUGGAUGAUCUGAUUAAAGAUACGUUAA---------------UACGU
...(((((...(((((((((((((------(.....)))))))))))))))))))..........((((...---------------.)))) ( -18.30)
>DroEre_CAF1 56064 71 + 1
AAUAGGGCUUAGUGCAAUAAGUGU------GAAUUAAGCGCUUGCUGGAUUAACUGAGUAGAGAUUUCUGAA---------------UAAAU
......(((((((.((.(((((((------.......))))))).)).....))))))).............---------------..... ( -13.90)
>DroYak_CAF1 54916 77 + 1
AAUAGGCCUUAGUUCAAUAAGAGU------GAAUUAAACGCUUACUGCAUUAUCUGACUAGAGAUUUCGGCAUUUUAA---------GAAAA
..(((((.((((((((.......)------)))))))..))))).(((...((((......))))....)))......---------..... ( -13.70)
>consensus
AAUAGGUUUUAGUUCAAUAAGUGU______GAAUUAUACGCUUGUUGGAUGAUCUGAUUAGAGAUACGUUAA_______________UAAGU
...........(((((((((((((.............))))))))))))).((((......))))........................... ( -9.06 =  -9.78 +   0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:34 2006