Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 892,993 – 893,098 |
Length | 105 |
Max. P | 0.945181 |
Location | 892,993 – 893,098 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 86.08 |
Mean single sequence MFE | -21.18 |
Consensus MFE | -17.75 |
Energy contribution | -17.92 |
Covariance contribution | 0.17 |
Combinations/Pair | 1.00 |
Mean z-score | -2.81 |
Structure conservation index | 0.84 |
SVM decision value | 1.35 |
SVM RNA-class probability | 0.945181 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 892993 105 + 22407834 UCCCUCCCACCCUCCCUCCUUUGUAAUAUGCCAUAUUUUCCGCUUUCUUUUUGCACCGUUUUCAUUUGUUACUAAAAUCAUAAACAAAUGUUGGUGCAGAGUUGC .........................................((.....((((((((((....((((((((............)))))))).))))))))))..)) ( -19.10) >DroSec_CAF1 21244 95 + 1 ----------CCUUCCUCCCUGGUAAUAUGCCACAUUUUCCGCUUUCUUUUUGCACCGUUUUCAUUUGUUACUAAAAUCAUAAACAAAUGUUGGUGCAGAGUUGC ----------..........((((.....))))........((.....((((((((((....((((((((............)))))))).))))))))))..)) ( -22.00) >DroSim_CAF1 17446 98 + 1 UCC-------CCUUCCUCCCUGGUAAUAUGCCAUAUUUUCCGCUUUCUUUUUGCACCGUUUUCAUUUGUUACUAAAAUCAUAAACAAAUGUUGGUGCAGAGUUGC ...-------..........((((.....))))........((.....((((((((((....((((((((............)))))))).))))))))))..)) ( -22.10) >DroEre_CAF1 24681 99 + 1 UCC-----GCCUGCCCCUGUUGGUAAUAUACAAUAUU-UCCGCUUUCUUUUUGCACCGUUUUCAUUUGUUACUAAAAUCAUAAACAAAUGUUGGUGCAGAGUUGC ...-----(((.((....)).))).............-...((.....((((((((((....((((((((............)))))))).))))))))))..)) ( -22.00) >DroYak_CAF1 21279 100 + 1 GCC-----GCUCCCCCUUGGUGGUAAUAUACAAUAUUUUCCGCUUUCUUUUUGCACCGUUUUCAUUUGUUACUAAAAUCAUAAACAAAUGUUGGUGCAGAGUUGC ((.-----((((......(((((.(((((...)))))..))))).......(((((((....((((((((............)))))))).))))))))))).)) ( -27.40) >DroAna_CAF1 22536 90 + 1 -----------CC----CCCCAGUAAUAUACAAUAUUUUCCUAUUUCUUUUUGCACAGUUUUCAUUUGUUACUAAAAUCAUAAACAAAUGUUGGUGCAGAGUUGC -----------..----...............................((((((((......((((((((............))))))))...)))))))).... ( -14.50) >consensus UCC_______CCUCCCUCCCUGGUAAUAUACAAUAUUUUCCGCUUUCUUUUUGCACCGUUUUCAUUUGUUACUAAAAUCAUAAACAAAUGUUGGUGCAGAGUUGC ................................................((((((((((....((((((((............)))))))).)))))))))).... (-17.75 = -17.92 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:40 2006