Locus 3108

Sequence ID 2L_DroMel_CAF1
Location 8,830,874 – 8,830,977
Length 103
Max. P 0.830232
window4944

overview

Window 4

Location 8,830,874 – 8,830,977
Length 103
Sequences 6
Columns 107
Reading direction forward
Mean pairwise identity 91.86
Mean single sequence MFE -23.61
Consensus MFE -20.08
Energy contribution -20.67
Covariance contribution 0.58
Combinations/Pair 1.12
Mean z-score -1.95
Structure conservation index 0.85
SVM decision value 0.71
SVM RNA-class probability 0.830232
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8830874 103 + 22407834
--AAAAACGAGCUUCGAUUUGCAUUUGUCGCAAUUUUCAUAAUAUUCACAGAUUUUUCUGUGGGCCUCUGCUUAUCUUCGAUUUUGAGGCCUGUUUAUUUG--UGUU
--..(((..(((...((.((((.......))))...))........((((((....))))))((((((.....(((...)))...)))))).)))..))).--.... ( -24.30)
>DroSec_CAF1 41033 105 + 1
--AAAAACGAGCUUCGAUUUGCAUUUGUCGCAAUUUUCAUAAUAUUCACAGAUUUUUCUGUGGGCCUCUGCUUAUCUUCGAUUUUGAGGCCUGUUUAUUUGUGUGUU
--..(((..(((...((.((((.......))))...))........((((((....))))))((((((.....(((...)))...)))))).)))..)))....... ( -24.30)
>DroSim_CAF1 39206 105 + 1
--AAAAACGAGCUUCGAUUUGCAUUUGUCGCAAUUUUCAUAAUAUUCACAGAUUUUUCUGUGGGCCUCUGCUUAUCUUCGAUUUUGAGGCCUGUUUAUUUGUGUGUU
--..(((..(((...((.((((.......))))...))........((((((....))))))((((((.....(((...)))...)))))).)))..)))....... ( -24.30)
>DroEre_CAF1 43628 103 + 1
--AAAAACGAGCUUCGAUUUGCAUUUGUCGCAAUUUUCAUAAUGCUCACAGAUUUUUCUGUGGGCCUCCGCUUAUCUUUGAUUUUGAGGCCUGUUUAUUUC--UGUU
--..(((((.(((((((.((((.......))))...)).....(((((((((....)))))))))....................))))).))))).....--.... ( -28.30)
>DroYak_CAF1 42020 102 + 1
--AAAAACGAGCUUCGAUUUGCAUUUGUCGCAAUUUUCAUAAUAUUCACAGAUUUUUCUGUGGGCC-CUGCUUAUCUUUGAUUUUGAGGCCUGUUUAUUUG--UGUU
--..(((((.(((((((.((((.......))))...))......((((((((....))))))))..-..................))))).))))).....--.... ( -22.80)
>DroAna_CAF1 40946 105 + 1
UAAAAAACGAGCCUCAAUUUGCAUUUGUCGCAAUUUUCAUAAUAUCCACAGAUUUUUUUUCAUGCCGGAGCUUAUCUUUGAUUUGGAGGCCUGGUUAGUUG--UGUU
.....(((.((((((...((((.......))))...............((((((.........((....))........)))))))))).)).))).....--.... ( -17.63)
>consensus
__AAAAACGAGCUUCGAUUUGCAUUUGUCGCAAUUUUCAUAAUAUUCACAGAUUUUUCUGUGGGCCUCUGCUUAUCUUCGAUUUUGAGGCCUGUUUAUUUG__UGUU
....(((((.(((((((.((((.......))))...........((((((((....))))))))...................))))))).)))))........... (-20.08 = -20.67 +   0.58)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:32 2006