Locus 3107

Sequence ID 2L_DroMel_CAF1
Location 8,826,473 – 8,826,588
Length 115
Max. P 0.507994
window4943

overview

Window 3

Location 8,826,473 – 8,826,588
Length 115
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 79.63
Mean single sequence MFE -45.00
Consensus MFE -30.87
Energy contribution -30.48
Covariance contribution -0.38
Combinations/Pair 1.28
Mean z-score -1.13
Structure conservation index 0.69
SVM decision value -0.05
SVM RNA-class probability 0.507994
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8826473 115 - 22407834
GAUGCCGCAUGUCCGUGCAACGCGGCACUUGUGUGAUGCGGCGGCAUGGUGGCAUGCAGCAGGCUGCCUUUCAUAUCCGAUUCCAUGGUCAGCAUCUUGC----GGGGAUU-ACUUCCAG
....((((((((((((((..((((.(((....))).))))...))))))..)))))).(((((.(((...((((..........))))...))).)))))----))(((..-...))).. ( -44.30)
>DroPse_CAF1 53350 115 - 1
GAGGCGGCAUGGCCGUGCAGAGCGGCACUGGUGUGAUGCGGCGGCAUUGUGGCAUGCAGCAGGCUGCCCUUCAUAUCCGAUUCCAUGGUCAGCAUGUUGUUAGAGGGGAAU-GUAU----
..((((((...(((((.....))))).(((.(((.((((.(((....))).))))))).))))))))).(((...((..((..((((.....))))..))..))...))).-....---- ( -43.70)
>DroSec_CAF1 36617 115 - 1
GAUGCCGCGUGUCCGUGCAACGCGGCACUUGUGUGAUGCGGCGGCAUGGUGGCAUGCAGCAGGCUGCCCUUCAUAUCCGAUUCCAUGGUCAGCAUCUUGC----UGGGAUU-GCUUCCAG
.((((((((((.(((((...)))))))).(((.....))))))))))((.(((((.(((((((.(((...((((..........))))...))).)))))----)).)..)-))).)).. ( -44.20)
>DroWil_CAF1 75483 104 - 1
GAGGCGGCAUGGCCAUGCAGGGCAGCGCUGGCAUGAUGCGGCGGCAUUGUGGCAUGCAAAAUGCCGCCCUUCAUAUCUGCCUCCAUGGUCAACAUGUC----------------CACCAG
..((.((((((((((((..(((((((....))((((.(.(((((((((.((.....)).)))))))))).))))...))))).))))))...)))).)----------------).)).. ( -46.80)
>DroAna_CAF1 36694 116 - 1
GAGGAGGCGUGGCCGUGGAGCGCGGCACUGGUGUGGUGCGGCGGCAUCGUGGCAUGCAGCAGGCUGCCCUUCAUGUCCGAUUCCAUGGUCAGCAUGUUAG----UUGGAUUUGAAUCUGG
..((((((...)))((((((.(((((.(((.((((.(((.(((....))).))))))).)))))))).)))))).)))(((((.....(((((......)----))))....)))))... ( -47.30)
>DroPer_CAF1 54173 115 - 1
GAGGCGGCAUGGCCGUGCAGAGCGGCACUGGUGUGAUGCGGCGGCAUUGUGGCAUGCAGCAGGCUGCCCUUCAUAUCCGAUUCCAUGGUCAGCAUGUUGUUAGAGGGGAAU-GUAU----
..((((((...(((((.....))))).(((.(((.((((.(((....))).))))))).))))))))).(((...((..((..((((.....))))..))..))...))).-....---- ( -43.70)
>consensus
GAGGCGGCAUGGCCGUGCAGCGCGGCACUGGUGUGAUGCGGCGGCAUUGUGGCAUGCAGCAGGCUGCCCUUCAUAUCCGAUUCCAUGGUCAGCAUGUUGC____GGGGAUU_GCAUCCAG
......((.((((((((.....(((.....((((((.(.((((((...((.(....).))..))))))).)))))))))....))))))))))........................... (-30.87 = -30.48 +  -0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:31 2006