Locus 3106

Sequence ID 2L_DroMel_CAF1
Location 8,825,035 – 8,825,130
Length 95
Max. P 0.627097
window4942

overview

Window 2

Location 8,825,035 – 8,825,130
Length 95
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 82.74
Mean single sequence MFE -34.43
Consensus MFE -23.72
Energy contribution -24.13
Covariance contribution 0.42
Combinations/Pair 1.12
Mean z-score -1.84
Structure conservation index 0.69
SVM decision value 0.19
SVM RNA-class probability 0.627097
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8825035 95 + 22407834
ACCAGGAAAAACUAUGCGCGUGAGACGCGCUCUAACGGCGAAAACGCCGCAAACACUAAGGCCCCUGGGUCCCUGGA-------UCCCUGGACUGGGUUGAG
.(((((.........(((((.....))))).....(((((....)))))..........((((....))))))))).-------.(((......)))..... ( -35.30)
>DroPse_CAF1 51683 97 + 1
AGAUGAAAAAACUAUGCGCGUGAGACGCGCUCUAACGGCAAACACGCCGCAAACACUGCGGCCCCGGGCUC-CUCAUUCUCUGUACCCGGGACAGGGA----
.(((((.........(((((.....)))))......(((......((((((.....)))))).....))).-.)))))((((((.(....))))))).---- ( -31.70)
>DroSec_CAF1 35183 95 + 1
ACCAGGAAAAACUAUGCGCGUGAGACGCGCUCUAACGGCGAAAACGCCGCAAACACUAAGGCCCCUGGGUCCCUGGA-------UCCCUGGACUGGGUUGAA
.(((((.........(((((.....))))).....(((((....)))))..........((((....))))))))).-------.(((......)))..... ( -35.30)
>DroEre_CAF1 37638 95 + 1
ACCAGGAAAAACUAUGCGCGUGAGACGCGCUCUAACGGCGAAAACGCCGCAAACACUAAGGCCCCUGGGUGCCCGGA-------UCCCUGGACUGGGCUGAA
.(((((.........(((((.....))))).....(((((....)))))..............)))))..((((((.-------((....)))))))).... ( -39.20)
>DroYak_CAF1 35981 95 + 1
ACCAGGAAAAACUAUGCGCGUGAGACGCGCUCUAACGGCGAAAACGCCGCAAACACUAAGGCCCCUGGGUCUCUGGA-------UCUCUGGACUGGGUUGAA
.((((..........(((((.....)))))((((.(((((....)))))......((((((((....))))).))).-------....))))))))...... ( -33.40)
>DroPer_CAF1 52511 97 + 1
AGAUGAAAAAACUAUGCGCGUGAGACGCGCUCUAACGGCAAACACGCCGCAAACACUGCGGCCCCGGGCUC-CUCAUUCUCUGUACCCGGGACAGGGA----
.(((((.........(((((.....)))))......(((......((((((.....)))))).....))).-.)))))((((((.(....))))))).---- ( -31.70)
>consensus
ACCAGGAAAAACUAUGCGCGUGAGACGCGCUCUAACGGCGAAAACGCCGCAAACACUAAGGCCCCUGGGUCCCUGGA_______UCCCUGGACUGGGUUGAA
.(((((.........(((((.....))))).....((((......))))..............))))).................(((......)))..... (-23.72 = -24.13 +   0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:30 2006