Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,822,329 – 8,822,428 |
Length | 99 |
Max. P | 0.875360 |
Location | 8,822,329 – 8,822,428 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.23 |
Mean single sequence MFE | -20.98 |
Consensus MFE | -17.66 |
Energy contribution | -17.93 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.05 |
Mean z-score | -2.28 |
Structure conservation index | 0.84 |
SVM decision value | 0.89 |
SVM RNA-class probability | 0.875360 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8822329 99 - 22407834 CUAUUCAGACUUAUUCAUUUUACACAUUCAUUUCCUCAUUCAAUUCGCAAUUGUAUACGAAAUUUCAAUUGUUUGUUGAAUGUAUUAUACGCGUUGUGG--------------------- ......................((((..........((((((((..(((((((............)))))))..))))))))............)))).--------------------- ( -17.95) >DroPse_CAF1 47842 120 - 1 CUAUUCAGACUUAUUCAUUUUACACAUUCAUUUCCUCAUUCAAUUCGCAAUUGUAUACGAAAUUUCAAUUGUUUGUUGAAUGUAUUAUGUGCGUUUUGCUGUAUGCUGUGUGGCUUCUGC .....((((.............(((((.........((((((((..(((((((............)))))))..))))))))....)))))......((..(((...)))..)).)))). ( -23.82) >DroWil_CAF1 70669 99 - 1 CUAUUCAGACUUAUUCAUUUUACACAUUCAUUUCCUCAUUCAAUUCGCAAUUGUAUACGAAAUUUCAAUUGUUUGUUGAAUGUAUUAUAUGCGUUGUGG--------------------- ......................((((..(((.....((((((((..(((((((............)))))))..))))))))......)))...)))).--------------------- ( -20.10) >DroYak_CAF1 33131 99 - 1 CUAUUCAGACUUAUUCAUUUUACACAUUCAUUUCCUCAUUCAAUUCGCAAUUGUAUACGAAAUUUCAAUUGUUUGUUGAAUGUAUUAUAUGCGUUGUGG--------------------- ......................((((..(((.....((((((((..(((((((............)))))))..))))))))......)))...)))).--------------------- ( -20.10) >DroAna_CAF1 32345 99 - 1 CUAUUCAGACUUAUUCAUUUUACACAUUCAUUUCCUCAUUCAAUUCGCAAUUGUAUACGAAAUUUCAAUUGUUUGUUGAAUGUAUUAUAUGCGUUGUGG--------------------- ......................((((..(((.....((((((((..(((((((............)))))))..))))))))......)))...)))).--------------------- ( -20.10) >DroPer_CAF1 48283 120 - 1 CUAUUCAGACUUAUUCAUUUUACACAUUCAUUUCCUCAUUCAAUUCGCAAUUGUAUACGAAAUUUCAAUUGUUUGUUGAAUGUAUUAUGUGCGUUUUGCUGUAUGCUGUGUGGCUUCUGC .....((((.............(((((.........((((((((..(((((((............)))))))..))))))))....)))))......((..(((...)))..)).)))). ( -23.82) >consensus CUAUUCAGACUUAUUCAUUUUACACAUUCAUUUCCUCAUUCAAUUCGCAAUUGUAUACGAAAUUUCAAUUGUUUGUUGAAUGUAUUAUAUGCGUUGUGG_____________________ ......................((((..(((.....((((((((..(((((((............)))))))..))))))))......)))...))))...................... (-17.66 = -17.93 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:26 2006