Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,821,317 – 8,821,410 |
Length | 93 |
Max. P | 0.611098 |
Location | 8,821,317 – 8,821,410 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 88.92 |
Mean single sequence MFE | -22.98 |
Consensus MFE | -21.86 |
Energy contribution | -21.91 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.10 |
Mean z-score | -1.08 |
Structure conservation index | 0.95 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.611098 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8821317 93 - 22407834 GUCAUUGAACUUAUUUCGCCAUAAAGGAAAAGUGAGUAAGGCCAUCGGAAUAUGAAUGAGCGGGAUGGCUAGACGGCGCAGGAGGG---------ACAGGAC (((.(((.((((((((..((.....))..))))))))..(((((((.................)))))))........)))....)---------))..... ( -22.23) >DroSec_CAF1 29483 93 - 1 GUCAUUGAACUUAUUUCGCCAUAAAGGAAAAGUGAGUAAGGCCAUCGGAAUAUGAAUGAGCGGGAUGGCUAGACGGCGCAGGAGGG---------ACAGGAC (((.(((.((((((((..((.....))..))))))))..(((((((.................)))))))........)))....)---------))..... ( -22.23) >DroSim_CAF1 29311 93 - 1 GUCAUUGAACUUAUUUCGCCAUAAAGGAAAAGUGAGUAAGGCCAUCGGAAUAUGAAUGAGCGGGAUGGCUAGACGGCGCAGGAGGG---------ACAGGAC (((.(((.((((((((..((.....))..))))))))..(((((((.................)))))))........)))....)---------))..... ( -22.23) >DroEre_CAF1 34009 84 - 1 GUCAUUGAACUUAUUUCGCCGUAAAGGAAAAGUGAGUAAGGCCAUCGGAAUAUGAAUGAGCGGGAUGGCCAGACGGCGCAG------------------GAC (((.....((((((((..((.....))..))))))))..(((((((.................))))))).))).......------------------... ( -25.23) >DroYak_CAF1 32037 102 - 1 GUCAUUGAACUUAUUUCGCCAUAAAGGAAAAGUGAGUAAGGCCAUCGGAAUAUGAAUGAGCGGGAUGGCUAGACGGCGCAGGAGGGACAGCAGGGACAGGAC (((.....((((((((..((.....))..))))))))..(((((((.................))))))).)))...((.(......).))........... ( -23.23) >DroAna_CAF1 31272 88 - 1 GUCAUUGAACUCAUUUCGCCAUAAAGGAAAAGUGAGUAAGGCCACCGGAAUAUGAAUGAGCGGGACGGCUAGACAGAGGAAGCG--------------GGAU (((.....((((((((..((.....))..))))))))..((((.(((.............)))...)))).)))..........--------------.... ( -22.72) >consensus GUCAUUGAACUUAUUUCGCCAUAAAGGAAAAGUGAGUAAGGCCAUCGGAAUAUGAAUGAGCGGGAUGGCUAGACGGCGCAGGAGGG_________ACAGGAC (((.....((((((((..((.....))..))))))))..(((((((.................))))))).)))............................ (-21.86 = -21.91 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:25 2006