Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,818,056 – 8,818,151 |
Length | 95 |
Max. P | 0.981051 |
Location | 8,818,056 – 8,818,151 |
---|---|
Length | 95 |
Sequences | 4 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 92.27 |
Mean single sequence MFE | -22.39 |
Consensus MFE | -21.81 |
Energy contribution | -21.80 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.05 |
Structure conservation index | 0.97 |
SVM decision value | 1.88 |
SVM RNA-class probability | 0.981051 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8818056 95 + 22407834 GAUCUAAUUGCAGAACGGGGCAACCUUUUUCUCCUUCCCAACUCGUAUUUU-----UUUUU---UUUUUUGCCCAGCCCCGGCGACUGCAAUUAAAAUGGAAC ....(((((((((..((((((..............................-----.....---...........))))))....)))))))))......... ( -21.45) >DroSec_CAF1 26232 103 + 1 GAUCUAAUUGCAGAACGGGGCGACCUUUUUCUCCUUCCCUACUCGUAUUUUACUUAUUUUUUUUUUUUUUGCCCAGCCCCGGCGACUGCAAUUAAAAUGGAAC ....(((((((((..((((((((......)).............(((...)))......................))))))....)))))))))......... ( -22.90) >DroSim_CAF1 26024 100 + 1 GAUCUAAUUGCAGAACGGGGCGACCUUUUUCUCCUUCCCUACUCGUAUUUUACUUAUUUUU---UUUUUUGCCCAGCCCCGGCGACUGCAAUUAAAAUGGAAC ....(((((((((..((((((((......)).............(((...)))........---...........))))))....)))))))))......... ( -22.90) >DroEre_CAF1 30755 98 + 1 GAUCUAAUUGCAGAACGGGGCGACCUU-UUCUCCUCCCCUACUUGUUUUUUC-UUUUUUUU---UUUUUUGCCCAGCCCCGGCGACUGCAAUUAAAAUGGAAC ....(((((((((...((((.(.....-.....).)))).............-........---....(((((.......))))))))))))))......... ( -22.30) >consensus GAUCUAAUUGCAGAACGGGGCGACCUUUUUCUCCUUCCCUACUCGUAUUUUA_UUAUUUUU___UUUUUUGCCCAGCCCCGGCGACUGCAAUUAAAAUGGAAC ....(((((((((..((((((......................................................))))))....)))))))))......... (-21.81 = -21.80 + -0.00)
Location | 8,818,056 – 8,818,151 |
---|---|
Length | 95 |
Sequences | 4 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 92.27 |
Mean single sequence MFE | -24.61 |
Consensus MFE | -23.76 |
Energy contribution | -23.57 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.05 |
Mean z-score | -1.77 |
Structure conservation index | 0.97 |
SVM decision value | 1.25 |
SVM RNA-class probability | 0.935934 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8818056 95 - 22407834 GUUCCAUUUUAAUUGCAGUCGCCGGGGCUGGGCAAAAAA---AAAAA-----AAAAUACGAGUUGGGAAGGAGAAAAAGGUUGCCCCGUUCUGCAAUUAGAUC .......(((((((((((....((((((...((......---.....-----..(((....)))...............)).))))))..))))))))))).. ( -23.39) >DroSec_CAF1 26232 103 - 1 GUUCCAUUUUAAUUGCAGUCGCCGGGGCUGGGCAAAAAAAAAAAAAAUAAGUAAAAUACGAGUAGGGAAGGAGAAAAAGGUCGCCCCGUUCUGCAAUUAGAUC .......(((((((((((....((((((..(((..............((.(((...)))...))...............)))))))))..))))))))))).. ( -25.45) >DroSim_CAF1 26024 100 - 1 GUUCCAUUUUAAUUGCAGUCGCCGGGGCUGGGCAAAAAA---AAAAAUAAGUAAAAUACGAGUAGGGAAGGAGAAAAAGGUCGCCCCGUUCUGCAAUUAGAUC .......(((((((((((....((((((...........---........(((...))).............((......))))))))..))))))))))).. ( -24.80) >DroEre_CAF1 30755 98 - 1 GUUCCAUUUUAAUUGCAGUCGCCGGGGCUGGGCAAAAAA---AAAAAAAA-GAAAAAACAAGUAGGGGAGGAGAA-AAGGUCGCCCCGUUCUGCAAUUAGAUC .......(((((((((((.((((.......)))......---........-.............((((.((....-....)).)))))..))))))))))).. ( -24.80) >consensus GUUCCAUUUUAAUUGCAGUCGCCGGGGCUGGGCAAAAAA___AAAAAUAA_UAAAAUACGAGUAGGGAAGGAGAAAAAGGUCGCCCCGUUCUGCAAUUAGAUC .......(((((((((((....((((((..(((..............................................)))))))))..))))))))))).. (-23.76 = -23.57 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:23 2006