Locus 3100

Sequence ID 2L_DroMel_CAF1
Location 8,817,452 – 8,817,557
Length 105
Max. P 0.631347
window4933

overview

Window 3

Location 8,817,452 – 8,817,557
Length 105
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 79.86
Mean single sequence MFE -35.48
Consensus MFE -23.61
Energy contribution -23.70
Covariance contribution 0.09
Combinations/Pair 1.19
Mean z-score -1.41
Structure conservation index 0.67
SVM decision value 0.20
SVM RNA-class probability 0.631347
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8817452 105 - 22407834
GGCUGGUGAUGAGUUUUUAAUGGCCGGCGCUGAC------------UGCGGCCAAUGUGAAUUAUGGUUUUCAUAUGUGCCGCACC-AAACUGGUUAUGGUCGUCGGAUUUG--AAACGC
.((((((.((.........)).)))))).(((((------------.(((((..(((((((........)))))))..)))))(((-.....))).......))))).....--...... ( -35.40)
>DroPse_CAF1 42370 118 - 1
GGCCGGUGAUGAGUUUUUAAUGGCUGGCGCUGGCCCGCUGGCUGCUUGCGGCCAAUGUGAAUUAUUGUUUUCAUAU--UCCGCACAAAAACUGGUUAUGCUUUCAUGAUUUUGCCAUCGC
((((((((.(.((((......)))).)))))))))((.((((....(((((..((((((((........)))))))--))))))........(((((((....)))))))..)))).)). ( -40.70)
>DroSim_CAF1 25419 105 - 1
GGCUGGUGAUGAGUUUUUAAUGGCCGGCGCUGAC------------UGCGGCCAAUGUGAAUUAUGGUUUUCAUAUGUGCCGCACC-AAACUGGUUAUGGUCGCCGGAUUCG--AAACGC
..((((((((.........((((((((...((..------------((((((..(((((((........)))))))..)))))).)-)..)))))))).)))))))).....--...... ( -35.00)
>DroEre_CAF1 30153 103 - 1
GGCUGGUGAUGAGUUUUUAAUGGCCGGCGCUGAC------------UGCGGCCAAUGUGAAUAAUGGU-CUCAUAUGUGCCGCACC-AAACUGGUUAUGGUCGUCGGGUU-G--AAGCGC
.((((((.((.........)).)))))).(((((------------.(((((..((((((........-.))))))..)))))(((-.....))).......)))))...-.--...... ( -33.30)
>DroAna_CAF1 27654 104 - 1
GGUCGGUGAUGAGUUUUUAAUGGCUGGCGCUGAC------------UUGGACCAAUGUGAAUUAUGGUUUUCAUAUACGUCGU-CG-AAACUGGUUAUGGUCGCAUGAUUUA--AGUCGC
((((((((.(.((((......)))).))))))))------------)..(((..(((((((........)))))))..)))..-((-(....(((((((....)))))))..--..))). ( -27.80)
>DroPer_CAF1 42725 118 - 1
GGCCGGUGAUGAGUUUUUAAUGGCUGGCGCUGGCCCGCUGGCUGCUUGCGGCCAAUGUGAAUUAUUGUUUUCAUAU--UCCGCACAAAAACUGGUUAUGCUUUCAUGAUUUUGCCAUCGC
((((((((.(.((((......)))).)))))))))((.((((....(((((..((((((((........)))))))--))))))........(((((((....)))))))..)))).)). ( -40.70)
>consensus
GGCCGGUGAUGAGUUUUUAAUGGCCGGCGCUGAC____________UGCGGCCAAUGUGAAUUAUGGUUUUCAUAUGUGCCGCACC_AAACUGGUUAUGGUCGCAGGAUUUG__AAUCGC
.((((((.((.........)).))))))..................((((((..(((((((........)))))))..)))))).................................... (-23.61 = -23.70 +   0.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:21 2006