Locus 310

Sequence ID 2L_DroMel_CAF1
Location 891,788 – 891,897
Length 109
Max. P 0.902244
window492

overview

Window 2

Location 891,788 – 891,897
Length 109
Sequences 6
Columns 112
Reading direction forward
Mean pairwise identity 80.82
Mean single sequence MFE -33.52
Consensus MFE -19.73
Energy contribution -20.48
Covariance contribution 0.75
Combinations/Pair 1.04
Mean z-score -2.71
Structure conservation index 0.59
SVM decision value 1.02
SVM RNA-class probability 0.902244
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 891788 109 + 22407834
UUCCAUCGCCUGGACC--CGAGAGGCGUCGCAUAAAUGUGUUGGCAAAACAUUUUUAUGAUGACGUGCUAAAGGGAAC-UCUGGGAUCUGUAUUCUGUAUAGUAUUCCGGGA
.((((.....))))((--(.((..((((((((((((.(((((.....))))).)))))).)))))).))...)))...-((((((((((((((...)))))).)))))))). ( -39.00)
>DroPse_CAF1 20205 93 + 1
GUAUCUGUACAGGGCC--CAAGAGGCGUCGCAUAAAUGUGUUGGCAAAACAUUUUUAUGAUGACGUGCUAAAGGGAACCGCUGGGAUCUGUA-----------------GGA
...(((.(((((..((--((((..((((((((((((.(((((.....))))).)))))).)))))).))...((...))..))))..)))))-----------------))) ( -31.30)
>DroSec_CAF1 20073 109 + 1
UUCCAUCGCCUGGACC--CGAGAGGCGUCGCAUAAAUGUGUUGGCAAAACAUUUUUAUGAUGACGUGCUAAAGGGAAC-UCUGGGAUCCGUAUUCUGUAUAGUAUUCCGGGA
.((((.....))))((--(.((..((((((((((((.(((((.....))))).)))))).)))))).))...)))...-(((((((((..(((...)))..).)))))))). ( -35.00)
>DroEre_CAF1 23536 89 + 1
UUCCAGCGCCUGGACC--CGAGAGGCGUCGCAUAAAUGUGUUGGCAAAACAUUUUUAUGAUGACGUGCUAAAG-GAAC-ACUGGGAUCUGGAA-------------------
.(((((..((..(..(--(.((..((((((((((((.(((((.....))))).)))))).)))))).))...)-)...-.)..))..))))).------------------- ( -33.20)
>DroYak_CAF1 20082 92 + 1
UUCCAUCGCCCGGACCCCCGAGAGGCGUCGCAUAAAUGUGUUGGCAAAACAUUUUUAUGAUGACGUGCUAAAGGGAAC-ACUGGGAUCUGUAC-------------------
...((...(((((...(((.((..((((((((((((.(((((.....))))).)))))).)))))).))...)))...-.)))))...))...------------------- ( -31.30)
>DroPer_CAF1 20218 93 + 1
GUAUCUGUACAGGGCC--CAAGAGGCGUCGCAUAAAUGUGUUGGCAAAACAUUUUUAUGAUGACGUGCUAAAGGGAACCGCUGGGAUCUGUA-----------------GGA
...(((.(((((..((--((((..((((((((((((.(((((.....))))).)))))).)))))).))...((...))..))))..)))))-----------------))) ( -31.30)
>consensus
UUCCAUCGCCUGGACC__CGAGAGGCGUCGCAUAAAUGUGUUGGCAAAACAUUUUUAUGAUGACGUGCUAAAGGGAAC_ACUGGGAUCUGUA_________________GGA
........(((((.((....((..((((((((((((.(((((.....))))).)))))).)))))).))....)).....)))))........................... (-19.73 = -20.48 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:39 2006