Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 135,486 – 135,579 |
Length | 93 |
Max. P | 0.921908 |
Location | 135,486 – 135,579 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 82.25 |
Mean single sequence MFE | -28.51 |
Consensus MFE | -22.97 |
Energy contribution | -21.11 |
Covariance contribution | -1.86 |
Combinations/Pair | 1.29 |
Mean z-score | -2.54 |
Structure conservation index | 0.81 |
SVM decision value | 1.14 |
SVM RNA-class probability | 0.921908 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 135486 93 - 22407834 AAUUAAUAAUCUGGUUUUUGGGCGACGGUGCGGAACUAUUGAGUUCUGUGGCCAUAACAGGCUAGUGCCUUGAUU-CGAUUGUUUAUGUGAUUU ....(((((((..(((...((((.((...((((((((....))))))))((((......)))).)))))).))).-.))))))).......... ( -28.10) >DroPse_CAF1 24057 93 - 1 CAUUAACGAUCUUGC-UAUGGAUUUCGGUGCGGAACUCUCAAGUUCUGCGUUCAUAACAAGCCUUAGUCUUGAUUAUGAUUGUUUAUGGGAAUC (((.(((((((....-...(((((..(((((((((((....))))))))((.....))..)))..))))).......))))))).)))...... ( -26.54) >DroSec_CAF1 18051 93 - 1 AAUUAAUAAUCUGGUUUAUGGGCGACGGUGCGGAACUGUUGAGUUCUGUGGCCAUAACAGGCUAGUGCCUUGAUU-CGAUUGUUUAUGCGAUUU ....(((((((..(((...((((.((...((((((((....))))))))((((......)))).)))))).))).-.))))))).......... ( -28.20) >DroSim_CAF1 19661 93 - 1 AAUUAAUAAUCUGGUUUAUGGGCGACGGUGCGGAACUGUUGAGUUCUGUGGCCAUAACAGGCUAGUGCCUUGAUU-CGAUUGUUUAUGUGAUUU ....(((((((..(((...((((.((...((((((((....))))))))((((......)))).)))))).))).-.))))))).......... ( -28.20) >DroEre_CAF1 23427 93 - 1 AAUUAAUAAUCUGGUUUAUGGGCGGCGGUGCGGAACUCUUGUGUUCUGCGGCCAUAACAGGCUGAUGCCUUGAUU-CGAUUGUUAAUGCGAUUU .((((((((((..(((...(((((.(...(((((((......)))))))((((......))))).))))).))).-.))))))))))....... ( -33.50) >DroPer_CAF1 26428 93 - 1 CAUUAACGAUCUUGC-UAUGGAUUUCGGUGCGGAACUCUCAAGUUCUGCGUUCAUAACAAGCCUUAGUCUUGAUUAUGAUUGUUUAUGGGAGUC (((.(((((((....-...(((((..(((((((((((....))))))))((.....))..)))..))))).......))))))).)))...... ( -26.54) >consensus AAUUAAUAAUCUGGUUUAUGGGCGACGGUGCGGAACUCUUGAGUUCUGCGGCCAUAACAGGCUAGUGCCUUGAUU_CGAUUGUUUAUGCGAUUU ....(((((((........(((((..(((((((((((....))))))))(.......)..)))..))))).......))))))).......... (-22.97 = -21.11 + -1.86)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:23:43 2006