Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,817,191 – 8,817,299 |
Length | 108 |
Max. P | 0.500000 |
Location | 8,817,191 – 8,817,299 |
---|---|
Length | 108 |
Sequences | 3 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 90.68 |
Mean single sequence MFE | -20.21 |
Consensus MFE | -18.29 |
Energy contribution | -17.97 |
Covariance contribution | -0.33 |
Combinations/Pair | 1.14 |
Mean z-score | -1.49 |
Structure conservation index | 0.91 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8817191 108 - 22407834 CAAAGAUUAGUUGGACCAGAAGGGAUUAUAUAAAGUGAUGAUCUAAUCACAAGAAAACCCAUGUGGCAUAUGCUGUUCUAAUCAGCACGUAAAUGGUUAGCUAAAAGA ......(((((((.((((...(((..........(((((......))))).......))).......(..(((((.......)))))..)...))))))))))).... ( -23.53) >DroSec_CAF1 25383 106 - 1 CAACUAUUAGUUGAACCAGAAGAGUUU--AUAAAAUAAUGAUCUAAUCACAAGAAAACACAUGUGGCACAUGCUGUUCUAAUCAGCACAUAAAUGGUUGACUAAAAGA ...((.((((((.(((((.........--.................(((((.(......).)))))....(((((.......)))))......))))))))))).)). ( -19.90) >DroSim_CAF1 25183 106 - 1 CAACGAUUAGUUGAACCAGAAGAGUUU--AUAAAAUAAUGAUCUAAUCACAAGAAAACACAUGUGGCACAUGCUGUUCUAAUCAGCACAUAAAUGGUUGACUACAAGA .......(((((.(((((.........--.................(((((.(......).)))))....(((((.......)))))......))))))))))..... ( -17.20) >consensus CAACGAUUAGUUGAACCAGAAGAGUUU__AUAAAAUAAUGAUCUAAUCACAAGAAAACACAUGUGGCACAUGCUGUUCUAAUCAGCACAUAAAUGGUUGACUAAAAGA ......((((((.(((((............................(((((.(......).)))))....(((((.......)))))......))))))))))).... (-18.29 = -17.97 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:20 2006