Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,814,679 – 8,814,780 |
Length | 101 |
Max. P | 0.942106 |
Location | 8,814,679 – 8,814,780 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 91.52 |
Mean single sequence MFE | -29.12 |
Consensus MFE | -24.90 |
Energy contribution | -24.65 |
Covariance contribution | -0.25 |
Combinations/Pair | 1.17 |
Mean z-score | -2.31 |
Structure conservation index | 0.86 |
SVM decision value | 1.32 |
SVM RNA-class probability | 0.942106 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8814679 101 + 22407834 A----CCAAUCCCAGUCGAACGAAAUUGGCUCCACGC--CACUGCUUGUUUUAGCCCCUCCCUGUAAUUAGCUGAGCAACUGGGCUUUAAUCAAGCAGAAAAUUGGA .----(((((................((((.....))--))(((((((((..((((((((.(((....)))..))).....)))))..)).)))))))...))))). ( -30.60) >DroSec_CAF1 22876 101 + 1 A----CCAAUCCCAGUCGAACGAAAUUGGCUCCACGC--CAUUGCUUGUUUUAGCCCCUCCCUGUAAUUAGCUGAGCAACUGGGCUUUAAUCAAGCAGAAAAUUGGA .----(((((................((((.....))--))(((((((((..((((((((.(((....)))..))).....)))))..)).)))))))...))))). ( -28.20) >DroSim_CAF1 22691 101 + 1 A----CCAAUCCCAGUCGAACGAAAUUGGCUCCACGC--CAUUGCUUGUUUUAGCCCCUCCCUGUAAUUAGCUGAGCAACUGGGCUUUAAUCAAGCAGAAAAUUGGA .----(((((................((((.....))--))(((((((((..((((((((.(((....)))..))).....)))))..)).)))))))...))))). ( -28.20) >DroEre_CAF1 27535 101 + 1 A----CCAAUCCCCGUCGCACCAAAUUGGCUCCACGC--CGCUGCUUGUUUUAGCCCCUCCCUGUAAUUAGCUGAGCAACUGGGCUUUAAUCAAGCGGAAAAUUGGA .----(((((.................(((.....))--).(((((((((..((((((((.(((....)))..))).....)))))..)).)))))))...))))). ( -29.00) >DroYak_CAF1 25258 101 + 1 A----CCAAUCCCAGUCGAACCAAAUUGGCUCCACGC--CACUGCUUGUUUUAGCCCCUCCCUGUAAUUAGCUGAGCAACUGGGCUUUAAUCAAGCAGAAAAUUGGA .----(((((................((((.....))--))(((((((((..((((((((.(((....)))..))).....)))))..)).)))))))...))))). ( -30.60) >DroAna_CAF1 25054 107 + 1 GCCAGCCAAUCCCACUUGAAACAAAUUAGCUCCAGAGCUCUCUGUUGGUUUUGGCCCCUCCCGGUAAUUAGCUGAGCAACUGGGCUUUAAUCAAGCAGAAAAUUGGA .....(((((....(((((........(((.((((.((((...(((((((((((......)))).))))))).))))..)))))))....)))))......))))). ( -28.10) >consensus A____CCAAUCCCAGUCGAACCAAAUUGGCUCCACGC__CACUGCUUGUUUUAGCCCCUCCCUGUAAUUAGCUGAGCAACUGGGCUUUAAUCAAGCAGAAAAUUGGA .....(((((....(((((......)))))...........(((((((((..((((((((.(((....)))..))).....)))))..)).)))))))...))))). (-24.90 = -24.65 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:19 2006