Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,812,326 – 8,812,436 |
Length | 110 |
Max. P | 0.918255 |
Location | 8,812,326 – 8,812,436 |
---|---|
Length | 110 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 79.13 |
Mean single sequence MFE | -27.42 |
Consensus MFE | -16.32 |
Energy contribution | -16.35 |
Covariance contribution | 0.03 |
Combinations/Pair | 1.04 |
Mean z-score | -2.30 |
Structure conservation index | 0.60 |
SVM decision value | 1.12 |
SVM RNA-class probability | 0.918255 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8812326 110 + 22407834 ---UUUUUUUUGUUGUAUCUGGGCAGUAAAUUAAGCGUAAAAUCGUAAAACCAGGCAAGGUGUGAAAUUUUAUGCCAGCCUUGAUUUAUGCCAACAUCAGU--GUU-CC----UGAUGCU ---..................((((.(((((((((((......))).......(((..(((((((....))))))).)))))))))))))))..((((((.--...-.)----))))).. ( -28.20) >DroPse_CAF1 35840 104 + 1 ---------------CAUCC-AGCAGUAAAUUAAGCGUAAAAUCAUAAAACCAGUCAAGGUGUGAAAUUUUAUGCCAACUUUGAUUUAUGCGGACAUCAGUCCGUUUCCCCCUGGAUGCC ---------------(((((-((..(((((((((((((((((((((...(((......)))))))..)))))))).....)))))))))((((((....))))))......))))))).. ( -32.60) >DroEre_CAF1 25244 113 + 1 CAAUUUUUUUUCUUGUAUCUGGGCAGUAAAUUAAGCGUAAAAUCGUAAAACCAGGCAAGGUGUGAAAUUUUAUGCCAGCCUUGAUUUAUGCCAACAUCAGA--GUU-CC----UGAUGCU .....................((((.(((((((((((......))).......(((..(((((((....))))))).)))))))))))))))..((((((.--...-.)----))))).. ( -28.70) >DroWil_CAF1 57995 94 + 1 ------------------AGGGGCAGUAAAUUAAGCGUGAAAUCAUAAAACCAGGCAAGGUGUGAAAUUUUAUGCCAACUUUGAUUUAUGCGAAAAGCAGA---UA-CC----AGAUGCU ------------------...(((((((((((((((((((((((((...(((......)))))))..)))))))).....)))))))))((.....))...---..-..----...)))) ( -19.80) >DroAna_CAF1 22843 102 + 1 ---------CCUUUGUAUCUGGGCAGUAAAUUAAGCGUAAACUCGUAAAACCAGGCAAGGUGUGAAAUUUUAUGCCAGCUUUGAUUUAUGCGAACAUCAGA----U-CC----UGAUGCU ---------.....(((((.(((((.((((((((((........((........))..(((((((....))))))).)).)))))))))))(.....)...----.-))----.))))). ( -22.60) >DroPer_CAF1 36042 104 + 1 ---------------CAUCC-AGCAGUAAAUUAAGCGUAAAAUCAUAAAACCAGUCAAGGUGUGAAAUUUUAUGCCAACUUUGAUUUAUGCGGACAUCAGUCCGUUUCCCCCUGGAUGCC ---------------(((((-((..(((((((((((((((((((((...(((......)))))))..)))))))).....)))))))))((((((....))))))......))))))).. ( -32.60) >consensus _______________UAUCUGGGCAGUAAAUUAAGCGUAAAAUCAUAAAACCAGGCAAGGUGUGAAAUUUUAUGCCAACUUUGAUUUAUGCGAACAUCAGA__GUU_CC____UGAUGCU ......................(((.(((((((((((((((((......(((......))).....))))))))).....)))))))))))............................. (-16.32 = -16.35 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:18 2006