Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,810,800 – 8,810,892 |
Length | 92 |
Max. P | 0.568689 |
Location | 8,810,800 – 8,810,892 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 82.02 |
Mean single sequence MFE | -22.82 |
Consensus MFE | -13.69 |
Energy contribution | -15.08 |
Covariance contribution | 1.39 |
Combinations/Pair | 1.06 |
Mean z-score | -1.98 |
Structure conservation index | 0.60 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.568689 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8810800 92 - 22407834 CAGAAAUCAUUCGCCA-GCGGCAAGAGCAACAGAAAGUGCAGAAAUGCAGUGCCAAUUGCGCAAUAGUUGAAGGCAUGAGGGCGACUCAAAGG ..........(((((.-.((((.....((((......((((....))))((((.....))))....))))...)).))..)))))........ ( -26.90) >DroSec_CAF1 19067 92 - 1 CAGAAAUCAUUCGCCA-GCAACAAAAGCAACUGAAAGUGCUGAAAUGCAGUGCCAAUUGCGCAAUAGUUGAAGGCAAGAGGGCGAUUCAAAGG ..........(((((.-(((.....((((........))))....)))..((((....((......))....))))....)))))........ ( -21.70) >DroSim_CAF1 18832 92 - 1 CAGAAAUCAUUCGCCA-GCGGCAAAAGCAACUGAAAGUGCUGAAAUGCAGUGCCAAUUGCGCAAUAGUUGAAGGCAAGAGGGCGAUUCAAAGG ..........(((((.-...((.....((((((....(((......)))((((.....))))..))))))...)).....)))))........ ( -24.70) >DroEre_CAF1 23702 92 - 1 CGGAAAUCAUUCGCCA-GCGGCAAAAGCAACUGAAAGUGCUGAAAUGCAGUGCCAAAGGCGCAAUAGUUGAAGGCAGUAGGGCAAUUCAAAGG ............(((.-((.((.....((((((....(((......)))(((((...)))))..))))))...)).))..))).......... ( -24.40) >DroYak_CAF1 21070 92 - 1 CAGAAAUCAUUCGCCA-GCGGCAAAAGCAACUGAAAGUGCUGAGAUGCAGUGCCAAAUGCGCAAUAGUUGAAGGCAGGAGGGCAAUUGAAAAG ......(((...(((.-.(.((.....((((((....(((......)))((((.....))))..))))))...))..)..)))...))).... ( -23.30) >DroAna_CAF1 21568 74 - 1 UAAAAAUCAUCAGCCAUGAGGCAAAAGUAAUUGAAAGCACUGAAGUGCAAUGCCAAAUGCGCAAUAUUUAAAUG------------------- ............(((((..((((.((....))....((((....))))..))))..))).))............------------------- ( -15.90) >consensus CAGAAAUCAUUCGCCA_GCGGCAAAAGCAACUGAAAGUGCUGAAAUGCAGUGCCAAAUGCGCAAUAGUUGAAGGCAAGAGGGCGAUUCAAAGG ............(((.....((.....((((((....(((......)))((((.....))))..))))))...)).....))).......... (-13.69 = -15.08 + 1.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:17 2006