Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,805,882 – 8,805,980 |
Length | 98 |
Max. P | 0.616639 |
Location | 8,805,882 – 8,805,980 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 82.07 |
Mean single sequence MFE | -32.05 |
Consensus MFE | -24.14 |
Energy contribution | -24.61 |
Covariance contribution | 0.48 |
Combinations/Pair | 1.28 |
Mean z-score | -1.45 |
Structure conservation index | 0.75 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.616639 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8805882 98 - 22407834 GUCCUCCACCAGGAUGUACAUACG--------AGUGUGUGCUAACCUGUCAAUAUUGCAUCACAGCCGCCCCAGGUGGCCGAAGGA----AA-GGGGGGGGGGCAGAUAUC (((((((.(((((..(((((((..--------..)))))))...)))...............(.((((((...)))))).).....----..-))..)))))))....... ( -35.90) >DroSec_CAF1 14005 93 - 1 GUCCUCCACCAGGAUGUACAUACG--------AGUGUGUGCUAACCUGUCAAUAUUGCAUCACAGCCGCCCCAGGUGGCACAAGGA----AA-GG-----GGGCAGAUAUC ((((.((..((((..(((((((..--------..)))))))...))))................((((((...)))))).......----..-))-----))))....... ( -32.10) >DroSim_CAF1 13783 93 - 1 GUCCUCCACCAGGAUGUACAUACG--------AGUGUGUGCUAACCUGUCAAUAUUGCAUCACAGCCGCCCCAGGUGGCACAAGGA----AA-GG-----GGGCAGAUAUC ((((.((..((((..(((((((..--------..)))))))...))))................((((((...)))))).......----..-))-----))))....... ( -32.10) >DroEre_CAF1 18692 94 - 1 GUCCUCCACCAGGAUGUAUAUACG--------AGUGUGUGCUAACCUGUCAAUAUUGCAUCACUGCCGCCCCAGGUGGCACGAGCA----AAAAG-----GGGCAGAUAUC (((((....((((..(((((((..--------..)))))))...))))......((((.((..(((((((...))))))).)))))----)...)-----))))....... ( -32.40) >DroYak_CAF1 15929 102 - 1 GUCCUCCACCAGGAUGUACAUGCGAGUGUGCGAGUGUGUGCUAACCUGUCAAUAUUGCAUCACUGCCACCCCAGGGGGCACAAGGA----AAAGG-----GGGCAGAUAUC ((((.((..((((..((((((((..(....)..))))))))...))))...........((..((((.((....))))))....))----...))-----))))....... ( -33.90) >DroAna_CAF1 16774 88 - 1 -ACCCCCACCAGAAUGUGGA---G--------AAUGUGUGUUUGCCUGUCAAUAUUGCAUCAGAGCCGCUCCAGGCGGCAAAUGGGAGUGAA-GU-----GGGCAG----- -....((((......)))).---.--------..........(((((.(((...((.(((....(((((.....)))))..))).)).))).-..-----))))).----- ( -25.90) >consensus GUCCUCCACCAGGAUGUACAUACG________AGUGUGUGCUAACCUGUCAAUAUUGCAUCACAGCCGCCCCAGGUGGCACAAGGA____AA_GG_____GGGCAGAUAUC (((((((..((((..((((((((..........))))))))...))))................((((((...))))))....)))..............))))....... (-24.14 = -24.61 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:16 2006